Rh6BG366500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000655
Physical Location & Seq
Forward (+)
59556017 .. 59556976
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG366500.1

Sequence Viewer

Length: 405 bp
ATGGCTGGTGGTGCCCGTTGCCGTGTCCGTTCAGGCGGAGGGTTGAGATCGTCCGGAAGAATTGGAGGAAAATCGACCGGCCTAAGATCAGGTTCCAGATTAAGTACCAGGGAACAACAAGATGCCCTTCTGAGGAGATATCCTGGTGCAGCTTATATTGTTACTCGTCGAAGATCAGAACCTGCCGCTGGCGCTGGCGCTGTGGCTTCAGACGAATTCATTTCGTTTGATACCTGCCGGAGTCTTTTGTATCACTACTATGATGTAACACGCTTGTGTGGGAGCGACAGTCCCGATAGTGTATCATATCGCGACACTATACTTAAGTTTTGTGGTATTCAGGTGTCACCTGATGAGTTAGACAAGAAGGCCTCTACTTCCACCAATGCAGCTCCTCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.37

Weight (kDa)

9.58

Isoelectric Point (pI)

66.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 190, 242
AccB1I GGYRCC 1 cut(s) 11
AccII CGCG 1 cut(s) 312
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 2 cut(s) 36, 186
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 132, 188
AflII CTTAAG 1 cut(s) 323
AjnI CCWGG 2 cut(s) 107, 142
AleI CACNNNNGTG 1 cut(s) 274
AluBI AGCT 2 cut(s) 152, 392
AluI AGCT 2 cut(s) 152, 392
AlwNI CAGNNNCTG 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 53
AoxI GGCC 2 cut(s) 79, 369
ApeKI GCWGC 2 cut(s) 149, 389
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 2 cut(s) 194, 200
AsuHPI GGTGA 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 161, 401
BceAI ACGGC 1 cut(s) 6
BciT130I CCWGG 2 cut(s) 109, 144
BfoI RGCGCY 2 cut(s) 195, 201
BfrI CTTAAG 1 cut(s) 323
BfuAI ACCTGC 2 cut(s) 190, 242
BisI GCNGC 3 cut(s) 150, 186, 390
BlsI GCNGC 3 cut(s) 151, 187, 391
Bme1390I CCNGG 2 cut(s) 109, 144
BmiI GGNNCC 2 cut(s) 13, 94
BmrFI CCNGG 2 cut(s) 109, 144
BmsI GCATC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 188
Bse118I RCCGGY 1 cut(s) 77
BseAI TCCGGA 1 cut(s) 53
BseBI CCWGG 2 cut(s) 109, 144
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 132, 188
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 2 cut(s) 148, 384
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 2 cut(s) 161, 401
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 81, 371
BshNI GGYRCC 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 78
BsiSI CCGG 3 cut(s) 54, 78, 238
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 2 cut(s) 132, 188
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 2 cut(s) 81, 371
Bsp1286I GDGCHC 1 cut(s) 16
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 3 cut(s) 47, 86, 173
Bsp68I TCGCGA 1 cut(s) 312
BspACI CCGC 2 cut(s) 36, 186
BspANI GGCC 2 cut(s) 81, 371
BspCNI CTCAG 1 cut(s) 123
BspEI TCCGGA 1 cut(s) 53
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 13, 94
BspMI ACCTGC 2 cut(s) 190, 242
BspT107I GGYRCC 1 cut(s) 11
BspTI CTTAAG 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 3 cut(s) 47, 86, 173
Bst2UI CCWGG 2 cut(s) 109, 144
Bst4CI ACNGT 1 cut(s) 290
BstAFI CTTAAG 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 190, 196
BstDEI CTNAG 2 cut(s) 83, 131
BstFNI CGCG 1 cut(s) 312
BstH2I RGCGCY 2 cut(s) 195, 201
BstHHI GCGC 2 cut(s) 194, 200
BstKTI GATC 3 cut(s) 50, 89, 176
BstMBI GATC 3 cut(s) 47, 86, 173
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 11, 191
BstNI CCWGG 2 cut(s) 109, 144
BstSCI CCNGG 2 cut(s) 107, 142
BstSLI GKGCMC 1 cut(s) 16
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 161, 401
BsuRI GGCC 2 cut(s) 81, 371
BtuMI TCGCGA 1 cut(s) 312
BveI ACCTGC 2 cut(s) 190, 242
Cac8I GCNNGC 2 cut(s) 190, 196
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 2 cut(s) 194, 200
Cfr10I RCCGGY 1 cut(s) 77
Csp6I GTAC 1 cut(s) 105
CviJI RGCY 6 cut(s) 5, 81, 152, 206, 371, 392
CviKI_1 RGCY 6 cut(s) 5, 81, 152, 206, 371, 392
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 2 cut(s) 83, 131
DpnI GATC 3 cut(s) 49, 88, 175
DpnII GATC 3 cut(s) 47, 86, 173
EciI GGCGGA 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 371
Eco32I GATATC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 107, 142
EcoRV GATATC 1 cut(s) 140
FaiI YATR 4 cut(s) 156, 261, 307, 320
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 150, 186, 390
Fsp4HI GCNGC 3 cut(s) 150, 186, 390
GlaI GCGC 2 cut(s) 193, 199
GluI GCNGC 3 cut(s) 150, 186, 390
HaeII RGCGCY 2 cut(s) 195, 201
HaeIII GGCC 2 cut(s) 81, 371
HapII CCGG 3 cut(s) 54, 78, 238
HhaI GCGC 2 cut(s) 194, 200
Hin6I GCGC 2 cut(s) 192, 198
HinP1I GCGC 2 cut(s) 192, 198
HinfI GANTC 1 cut(s) 241
HpaII CCGG 3 cut(s) 54, 78, 238
HphI GGTGA 1 cut(s) 339
Hpy188I TCNGA 3 cut(s) 132, 178, 211
Hpy188III TCNNGA 4 cut(s) 54, 96, 293, 311
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 137, 361
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4V TGCA 2 cut(s) 149, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 191
HpyF3I CTNAG 2 cut(s) 83, 131
HspAI GCGC 2 cut(s) 192, 198
Kpn2I TCCGGA 1 cut(s) 53
Kzo9I GATC 3 cut(s) 47, 86, 173
LmnI GCTCC 2 cut(s) 282, 397
Lsp1109I GCAGC 2 cut(s) 161, 401
LweI GCATC 1 cut(s) 112
MaeIII GTNAC 3 cut(s) 160, 265, 345
MalI GATC 3 cut(s) 49, 88, 175
MboI GATC 3 cut(s) 47, 86, 173
MboII GAAGA 2 cut(s) 69, 183
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 60, 215
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 5 cut(s) 32, 59, 126, 382, 405
MroI TCCGGA 1 cut(s) 53
MseI TTAA 2 cut(s) 101, 324
MslI CAYNNNNRTG 2 cut(s) 258, 274
MspA1I CMGCKG 1 cut(s) 188
MspCI CTTAAG 1 cut(s) 323
MspI CCGG 3 cut(s) 54, 78, 238
MspR9I CCNGG 2 cut(s) 109, 144
MvaI CCWGG 2 cut(s) 109, 144
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 11, 191
NdeII GATC 3 cut(s) 47, 86, 173
NlaIV GGNNCC 2 cut(s) 13, 94
NmuCI GTSAC 1 cut(s) 345
NruI TCGCGA 1 cut(s) 312
OliI CACNNNNGTG 1 cut(s) 274
PceI AGGCCT 1 cut(s) 371
PkrI GCNGC 3 cut(s) 151, 187, 391
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 107, 142
PspGI CCWGG 2 cut(s) 107, 142
PspN4I GGNNCC 2 cut(s) 13, 94
PstNI CAGNNNCTG 1 cut(s) 182
RruI TCGCGA 1 cut(s) 312
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 2 cut(s) 258, 274
SaqAI TTAA 2 cut(s) 101, 324
SatI GCNGC 3 cut(s) 150, 186, 390
Sau3AI GATC 3 cut(s) 47, 86, 173
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 2 cut(s) 109, 144
SduI GDGCHC 1 cut(s) 16
SetI ASST 7 cut(s) 94, 154, 184, 236, 345, 352, 394
SfaNI GCATC 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 258, 274
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 2 cut(s) 60, 215
SseBI AGGCCT 1 cut(s) 371
SsiI CCGC 2 cut(s) 36, 186
StuI AGGCCT 1 cut(s) 371
StyD4I CCNGG 2 cut(s) 107, 142
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 2 cut(s) 74, 169
TasI AATT 2 cut(s) 60, 215
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 101, 324
Tru9I TTAA 2 cut(s) 101, 324
TseFI GTSAC 1 cut(s) 345
TseI GCWGC 2 cut(s) 149, 389
Tsp45I GTSAC 1 cut(s) 345
TspDTI ATGAA 1 cut(s) 208
TspGWI ACGGA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 323
XapI RAATTY 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.