RchiOBHm_Chr6g0294701

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000655
Physical Location & Seq
Reverse (-)
56909652 .. 56909931
280 bp
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UTR
Exon/CDS
Intron
PRQ26450

Sequence Viewer

Length: 195 bp
ATGCATGACTCGATTTTGATTAAGGGCTCATCTGAGGAGAGCAATGTATTGCCGAATCTGGGGTTGAGAGGATTTGATGTTATCGATGATGCCAAGACACAACAGGAGGCCTTGTGTCCTGGACTTGTTTCATGTGCTGATATACTTGCATTGGCTGCTCGTGATTCTGTTGTCTTGAGTGACTGTCCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

64

Amino Acids

6.7

Weight (kDa)

4.2

Isoelectric Point (pI)

66.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 4 - 63 6.7e-17 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 59
AjnI CCWGG 1 cut(s) 118
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 29
BauI CACGAG 1 cut(s) 159
BbvI GCAGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 120
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 79
Bsa29I ATCGAT 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 120
BseCI ATCGAT 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 110
BshVI ATCGAT 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 29
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 25
BspDI ATCGAT 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 49
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 142
Bsu15I ATCGAT 1 cut(s) 84
BsuRI GGCC 1 cut(s) 110
BsuTUI ATCGAT 1 cut(s) 84
ClaI ATCGAT 1 cut(s) 84
CviAII CATG 2 cut(s) 5, 132
CviJI RGCY 3 cut(s) 27, 110, 155
CviKI_1 RGCY 3 cut(s) 27, 110, 155
DdeI CTNAG 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 29
FaeI CATG 2 cut(s) 8, 135
FaiI YATR 3 cut(s) 6, 133, 143
FatI CATG 2 cut(s) 4, 131
Fnu4HI GCNGC 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 2 cut(s) 8, 135
HinfI GANTC 3 cut(s) 8, 55, 164
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 161, 175
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 4, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 33
Hsp92II CATG 2 cut(s) 8, 135
LpnPI CCDG 4 cut(s) 44, 89, 105, 132
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 29
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 3 cut(s) 28, 62, 100
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 155
NlaIII CATG 2 cut(s) 8, 135
NmuCI GTSAC 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 110
PfeI GAWTC 2 cut(s) 55, 164
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 156
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 29
SfaNI GCATC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
SseBI AGGCCT 1 cut(s) 110
StuI AGGCCT 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 2 cut(s) 11, 84
TfiI GAWTC 2 cut(s) 55, 164
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 120
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.