Rh6AG360100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
55858359 .. 55859917
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG360100.1

Sequence Viewer

Length: 360 bp
ATGGGTCTTTCCGGTTCTTCTCGTCGCCGTTCCGAAGAATCATCATCCTCTTTCTCCCGACAACCAAAGAGTCTTACTCAAGTTCAAGACGAGCTTGTCAAGAAATATGCTTCCGGTGCTGTGGTTATTCTGACCAGAACTCCTCCGAGATCAGCTGATGACTTTAGGCGGGAGTATCTTCTGCAGAAATACCTTACTTGTGAGGAATGGATTCAACGGTTCTACAAGTTACAACGCCTCCGTAGGAGCAATTGCCCTGAATGGTCCAAGATAAGGATTGAGACCTGTGGCCTTGAGGTTTGCCCTGAAAAGTTACTGAATGACTCGACTCCCGTTAGCTTGCTAATGACTCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.83

Weight (kDa)

9.38

Isoelectric Point (pI)

81.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AciI CCGC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 2 cut(s) 86, 215
AluBI AGCT 3 cut(s) 94, 155, 339
AluI AGCT 3 cut(s) 94, 155, 339
Alw26I GTCTC 1 cut(s) 275
AoxI GGCC 1 cut(s) 289
Asp700I GAANNNNTTC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 264
AvaII GGWCC 1 cut(s) 264
BceAI ACGGC 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 1 cut(s) 358
BfmI CTRYAG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 61, 93
BpuEI CTTGAG 2 cut(s) 63, 314
BsaI GGTCTC 1 cut(s) 275
BsaWI WCCGGW 2 cut(s) 11, 113
BsaXI ACNNNNNCTCC 4 cut(s) 124, 154, 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 132
BshFI GGCC 1 cut(s) 291
BsiSI CCGG 2 cut(s) 12, 114
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 275
BsnI GGCC 1 cut(s) 291
Bso31I GGTCTC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 149
BspACI CCGC 1 cut(s) 169
BspANI GGCC 1 cut(s) 291
BspMAI CTGCAG 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 275
BssMI GATC 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 341
BstF5I GGATG 1 cut(s) 44
BstKTI GATC 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 182
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 264
CviJI RGCY 4 cut(s) 94, 155, 291, 339
CviKI_1 RGCY 4 cut(s) 94, 155, 291, 339
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 264
FaiI YATR 1 cut(s) 108
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FauI CCCGC 1 cut(s) 162
FokI GGATG 1 cut(s) 31
FspBI CTAG 1 cut(s) 358
HaeIII GGCC 1 cut(s) 291
HapII CCGG 2 cut(s) 12, 114
HinfI GANTC 6 cut(s) 38, 70, 211, 323, 328, 349
HpaII CCGG 2 cut(s) 12, 114
Hpy188I TCNGA 3 cut(s) 34, 132, 147
Hpy188III TCNNGA 3 cut(s) 57, 86, 100
Hpy99I CGWCG 1 cut(s) 27
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Kzo9I GATC 1 cut(s) 149
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 6 cut(s) 25, 127, 148, 270, 298, 318
MaeI CTAG 1 cut(s) 358
MaeIII GTNAC 2 cut(s) 228, 312
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 3 cut(s) 9, 47, 170
MfeI CAATTG 1 cut(s) 250
MluCI AATT 1 cut(s) 250
MlyI GAGTC 4 cut(s) 79, 317, 322, 343
MnlI CCTC 5 cut(s) 58, 153, 196, 248, 289
MroXI GAANNNNTTC 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 2 cut(s) 12, 114
MunI CAATTG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 38, 211
PleI GAGTC 4 cut(s) 78, 317, 322, 343
PpsI GAGTC 4 cut(s) 78, 317, 322, 343
PspPI GGNCC 1 cut(s) 264
PstI CTGCAG 1 cut(s) 186
PvuII CAGCTG 1 cut(s) 155
Sau3AI GATC 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 4 cut(s) 79, 317, 322, 343
SetI ASST 6 cut(s) 96, 157, 195, 287, 300, 341
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 1 cut(s) 264
SmlI CTYRAG 2 cut(s) 78, 293
SmoI CTYRAG 2 cut(s) 78, 293
Sse9I AATT 1 cut(s) 250
SsiI CCGC 1 cut(s) 169
SspMI CTAG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 326
TasI AATT 1 cut(s) 250
TfiI GAWTC 2 cut(s) 38, 211
TspGWI ACGGA 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.