Rmu_co8111738.1_g000001

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8111738.1
OG0000655
Physical Location & Seq
Reverse (-)
1 .. 601
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8111738.1_g000001.1.cds

Sequence Viewer

Length: 195 bp
atgcttaattgtgttattgtgcatgactcgattttgattaaaggctcatccgcggagagcaatgcattgccgaatctggggttgagaggatttgatgttatcgatgatgcaaagacacaactggaggccttgtgtcctggacttgtttcatgtgctgatatacttgcattggctgctcgtgattctgttgtcttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

65

Amino Acids

6.75

Weight (kDa)

4.4

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 53
AciI CCGC 2 cut(s) 51, 53
AfiI CCNNNNNNNGG 1 cut(s) 77
AjnI CCWGG 1 cut(s) 136
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 173
BauI CACGAG 1 cut(s) 177
BbvI GCAGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 138
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 2 cut(s) 65, 67
BseBI CCWGG 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 2 cut(s) 65, 67
BseNI ACTGG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 77
BsnI GGCC 1 cut(s) 128
BspACI CCGC 2 cut(s) 51, 53
BspANI GGCC 1 cut(s) 128
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 53
BsrDI GCAATG 2 cut(s) 65, 67
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 51
BssSI CACGAG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 173
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 47
BstFNI CGCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 160
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 1 cut(s) 128
BsuTUI ATCGAT 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 47
Cfr42I CCGCGG 1 cut(s) 54
ClaI ATCGAT 1 cut(s) 102
CviAII CATG 2 cut(s) 23, 150
CviJI RGCY 3 cut(s) 45, 128, 173
CviKI_1 RGCY 3 cut(s) 45, 128, 173
Eco147I AGGCCT 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 67
FaeI CATG 2 cut(s) 26, 153
FaiI YATR 3 cut(s) 24, 151, 161
FatI CATG 2 cut(s) 22, 149
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 2 cut(s) 26, 153
HinfI GANTC 3 cut(s) 26, 73, 182
Hpy188III TCNNGA 1 cut(s) 179
HpyCH4V TGCA 4 cut(s) 22, 65, 110, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
Hsp92II CATG 2 cut(s) 26, 153
KspI CCGCGG 1 cut(s) 54
LpnPI CCDG 4 cut(s) 62, 107, 123, 150
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 97
MluCI AATT 1 cut(s) 7
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 2 cut(s) 80, 118
Mph1103I ATGCAT 1 cut(s) 67
MseI TTAA 2 cut(s) 6, 39
MspA1I CMGCKG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 173
NlaIII CATG 2 cut(s) 26, 153
NsiI ATGCAT 1 cut(s) 67
PceI AGGCCT 1 cut(s) 128
PfeI GAWTC 2 cut(s) 73, 182
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
SacII CCGCGG 1 cut(s) 54
SaqAI TTAA 2 cut(s) 6, 39
SatI GCNGC 1 cut(s) 174
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 138
SfaNI GCATC 1 cut(s) 97
Sfr303I CCGCGG 1 cut(s) 54
SgrBI CCGCGG 1 cut(s) 54
Sse9I AATT 1 cut(s) 7
SseBI AGGCCT 1 cut(s) 128
SsiI CCGC 2 cut(s) 51, 53
StuI AGGCCT 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 136
TaqI TCGA 2 cut(s) 29, 102
TasI AATT 1 cut(s) 7
TfiI GAWTC 2 cut(s) 73, 182
Tru1I TTAA 2 cut(s) 6, 39
Tru9I TTAA 2 cut(s) 6, 39
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.