FvH4_7g19400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000655
Physical Location & Seq
Forward (+)
16016801 .. 16017541
741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19400.t1

Sequence Viewer

Length: 324 bp
ATGGGTCAATCGGTCTCCTCCTCTGCCGGTCCTCCCCAACTAACCCGTAGTCAGCGCCAAGATGAGCTTGTGAACCTGTTTCCTCCTGGCACTGCCAAGGTTCATCGTCGTCCAAACACAAATCCCAATGGGTCTGAAATTGAAACCGTTTCTCGTTTTGATTTTCCTGCCGATTATGGCTGCAAATCATGGGCCGAGGAATTATATAAGGTACTGCATCACAAGGGCTTCCATGGACCAGAATATTATAACGAACTTCTGCGTGATTACTGTGGTATCGAGGTGCAGCTCCGTAAGCTAAAGAATCAATCTAGTTCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.11

Weight (kDa)

7.82

Isoelectric Point (pI)

66.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AfaI GTAC 1 cut(s) 213
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 3 cut(s) 67, 289, 298
AluI AGCT 3 cut(s) 67, 289, 298
Alw26I GTCTC 1 cut(s) 19
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 180, 286
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 3 cut(s) 29, 192, 236
AvaII GGWCC 2 cut(s) 29, 236
BaeI ACNNNNGTAYC 2 cut(s) 259, 292
BbvI GCAGC 2 cut(s) 167, 298
BciT130I CCWGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 2 cut(s) 312, 318
BfoI RGCGCY 1 cut(s) 58
BisI GCNGC 2 cut(s) 181, 287
BlsI GCNGC 2 cut(s) 182, 288
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 2 cut(s) 29, 236
BmgT120I GGNCC 3 cut(s) 29, 192, 236
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 3 cut(s) 96, 195, 232
Bse118I RCCGGY 1 cut(s) 26
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 3 cut(s) 96, 195, 232
BseRI GAGGAG 2 cut(s) 7, 10
BseXI GCAGC 2 cut(s) 167, 298
BsgI GTGCAG 1 cut(s) 305
BshFI GGCC 1 cut(s) 194
BsiSI CCGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 19
BsnI GGCC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 19
Bsp19I CCATGG 1 cut(s) 232
BspANI GGCC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 96, 195, 232
BssT1I CCWWGG 2 cut(s) 96, 232
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 148, 272
BstDSI CCRYGG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstV1I GCAGC 2 cut(s) 167, 298
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 29, 192, 236
Csp6I GTAC 1 cut(s) 212
CviAII CATG 2 cut(s) 189, 233
CviJI RGCY 6 cut(s) 67, 180, 194, 228, 289, 298
CviKI_1 RGCY 6 cut(s) 67, 180, 194, 228, 289, 298
CviQI GTAC 1 cut(s) 212
Eco130I CCWWGG 2 cut(s) 96, 232
Eco31I GGTCTC 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 29, 236
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 96, 232
ErhI CCWWGG 2 cut(s) 96, 232
FaeI CATG 2 cut(s) 192, 236
FaiI YATR 6 cut(s) 177, 190, 205, 207, 234, 249
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 2 cut(s) 188, 232
Fnu4HI GCNGC 2 cut(s) 181, 287
Fsp4HI GCNGC 2 cut(s) 181, 287
FspBI CTAG 2 cut(s) 312, 318
GlaI GCGC 1 cut(s) 56
GluI GCNGC 2 cut(s) 181, 287
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 27
HhaI GCGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 192, 236
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 304
HpaII CCGG 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 111
HpyCH4III ACNGT 2 cut(s) 148, 272
HpyCH4V TGCA 3 cut(s) 183, 217, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
Hsp92II CATG 2 cut(s) 192, 236
HspAI GCGC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 294
LpnPI CCDG 6 cut(s) 40, 72, 89, 99, 180, 252
Lsp1109I GCAGC 2 cut(s) 167, 298
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 312, 318
MluCI AATT 2 cut(s) 138, 200
MnlI CCTC 6 cut(s) 28, 31, 42, 93, 190, 274
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 295
NcoI CCATGG 1 cut(s) 232
NlaIII CATG 2 cut(s) 192, 236
NmeAIII GCCGAG 1 cut(s) 220
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 2 cut(s) 182, 288
PsiI TTATAA 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspPI GGNCC 3 cut(s) 29, 192, 236
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SatI GCNGC 2 cut(s) 181, 287
Sau96I GGNCC 3 cut(s) 29, 192, 236
ScrFI CCNGG 1 cut(s) 87
SetI ASST 7 cut(s) 69, 78, 102, 213, 285, 291, 300
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 2 cut(s) 29, 236
Sse9I AATT 2 cut(s) 138, 200
SspI AATATT 1 cut(s) 245
SspMI CTAG 2 cut(s) 312, 318
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 2 cut(s) 96, 232
TaaI ACNGT 2 cut(s) 148, 272
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 138, 200
TfiI GAWTC 1 cut(s) 304
TscAI CASTG 1 cut(s) 97
TseI GCWGC 2 cut(s) 180, 286
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 2 cut(s) 29, 236
XspI CTAG 2 cut(s) 312, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.