Rh1BG352200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000655
Physical Location & Seq
Reverse (-)
48452945 .. 48456326
3382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG352200.1

Sequence Viewer

Length: 435 bp
ATGACCCATAGCTCTGGCTTTCCCATATATGCCTTGAACCTTGGACCGCAAGAAAAGAAAAAGCCTCTTAATTTTACGAGTCCATTCCACGCTCTATTCGATCAGCTGCGGCTCCGGTCCTCCTCCACTGGGAATTTCATGGCTCAATCAAGTTCGGTAGGTACTCCTAGTCAACGTCAGGATGAGCTTGTGAAGAAATTTCCAGGGTCAAAGATTATTCGTCGTCCAAATCCAATGGAAGAAGCCGATGATTCAACTTACATTAAATTTCCAGAACATGACTGCGGGAATTATATGGAAAGATTCTATGAGCAGTCTCATCTCTATCACCTCGCAACTCTCCACGACGATCTTTTTACTCATCAAATTTCAAATATGGACAAGAACGACGTGTTGCAAAACAAACCCCTTTCATTACATGCAGCCCCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.42

Weight (kDa)

6.7

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 47, 109, 285
AcsI RAATTY 4 cut(s) 133, 197, 266, 366
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 129
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 3 cut(s) 37, 255, 372
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 3 cut(s) 12, 106, 187
AluI AGCT 3 cut(s) 12, 106, 187
Alw26I GTCTC 1 cut(s) 321
AlwNI CAGNNNCTG 1 cut(s) 428
ApeKI GCWGC 2 cut(s) 106, 422
ApoI RAATTY 4 cut(s) 133, 197, 266, 366
AspS9I GGNCC 2 cut(s) 44, 117
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 2 cut(s) 44, 117
BbvI GCAGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 1 cut(s) 168
BisI GCNGC 3 cut(s) 107, 110, 423
BlsI GCNGC 3 cut(s) 108, 111, 424
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 2 cut(s) 44, 117
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 2 cut(s) 44, 117
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 40, 203
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 40, 203
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 100, 349
BspACI CCGC 3 cut(s) 47, 109, 285
BspLI GGNNCC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 40, 203
BssMI GATC 2 cut(s) 100, 349
BssT1I CCWWGG 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 428
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 2 cut(s) 103, 352
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 2 cut(s) 100, 349
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 14
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 428
Cfr13I GGNCC 2 cut(s) 44, 117
Csp6I GTAC 1 cut(s) 162
CviAII CATG 4 cut(s) 139, 278, 419, 432
CviJI RGCY 9 cut(s) 12, 18, 64, 106, 112, 143, 187, 245, 425
CviKI_1 RGCY 9 cut(s) 12, 18, 64, 106, 112, 143, 187, 245, 425
CviQI GTAC 1 cut(s) 162
DpnI GATC 2 cut(s) 102, 351
DpnII GATC 2 cut(s) 100, 349
Eco130I CCWWGG 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 44, 117
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 4 cut(s) 142, 281, 422, 435
FatI CATG 4 cut(s) 138, 277, 418, 431
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 3 cut(s) 107, 110, 423
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 3 cut(s) 107, 110, 423
FspBI CTAG 1 cut(s) 168
GluI GCNGC 3 cut(s) 107, 110, 423
HapII CCGG 1 cut(s) 115
Hin1II CATG 4 cut(s) 142, 281, 422, 435
HincII GTYRAC 1 cut(s) 173
HindII GTYRAC 1 cut(s) 173
HinfI GANTC 3 cut(s) 79, 251, 303
HpaII CCGG 1 cut(s) 115
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 179, 272
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 3 cut(s) 225, 350, 392
HpyCH4IV ACGT 2 cut(s) 175, 390
HpyCH4V TGCA 3 cut(s) 397, 422, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpySE526I ACGT 2 cut(s) 175, 390
Hsp92II CATG 4 cut(s) 142, 281, 422, 435
Kzo9I GATC 2 cut(s) 100, 349
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 6 cut(s) 114, 128, 164, 189, 216, 285
Lsp1109I GCAGC 1 cut(s) 93
MaeI CTAG 1 cut(s) 168
MaeII ACGT 2 cut(s) 175, 390
MalI GATC 2 cut(s) 102, 351
MboI GATC 2 cut(s) 100, 349
MboII GAAGA 2 cut(s) 205, 251
MluCI AATT 6 cut(s) 70, 133, 197, 266, 289, 366
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 4 cut(s) 75, 130, 133, 341
MseI TTAA 2 cut(s) 69, 264
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 428
NdeII GATC 2 cut(s) 100, 349
NlaIII CATG 4 cut(s) 142, 281, 422, 435
NlaIV GGNNCC 1 cut(s) 113
NspI RCATGY 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 2 cut(s) 251, 303
PkrI GCNGC 3 cut(s) 108, 111, 424
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 2 cut(s) 44, 117
PstNI CAGNNNCTG 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 69, 264
SatI GCNGC 3 cut(s) 107, 110, 423
Sau3AI GATC 2 cut(s) 100, 349
Sau96I GGNCC 2 cut(s) 44, 117
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 204
SetI ASST 8 cut(s) 14, 42, 108, 163, 178, 189, 333, 393
SinI GGWCC 2 cut(s) 44, 117
Sse9I AATT 6 cut(s) 70, 133, 197, 266, 289, 366
SsiI CCGC 3 cut(s) 47, 109, 285
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 40
TaiI ACGT 2 cut(s) 178, 393
TaqI TCGA 1 cut(s) 99
TasI AATT 6 cut(s) 70, 133, 197, 266, 289, 366
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 2 cut(s) 251, 303
Tru1I TTAA 2 cut(s) 69, 264
Tru9I TTAA 2 cut(s) 69, 264
TscAI CASTG 1 cut(s) 133
TseI GCWGC 2 cut(s) 106, 422
TspDTI ATGAA 2 cut(s) 127, 402
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 44, 117
XapI RAATTY 4 cut(s) 133, 197, 266, 366
XceI RCATGY 1 cut(s) 422
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.