Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000475.1

Orthogroup ID

OG0000655

Physical Location & Seq

Genomic Coordinates Reverse (-)

44541 .. 46976

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000475.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgtttcctggcactgctaaggttattcttcgtccaagaacaaatccagatggctctgaaattgttaccgtaactgattatgagtttcctgatcttagatgtaagctctggttgaagaatctctatcaggcaatgcgtttatgtgggagggatcatggaaatttcgtagcagatttccaaggagggttaaagacattctgtggcattgaagtggaccttgatgcgatggagaagccaatagggaatggttttgctacatctcccagttttgtacttcgaaactttgttgattctgtacatttggagttggttcagattcattccggattgatgcttaattgtgttattgtgcatgactcgattttgattaaaggctcatccgcggagagcaatgcattgcctaatctggggttgagaggatttgatgttatcgatgatgcaaagacacaactggaggccttgtgtcctggacttgtttcaggtgctgatatacttgcattggctgctcgtgattctgttgtcttgggatcaaatttaccatctcctctctataccattgctgtccaaagcaaacaaatttccgctaaaggccttgacgatcacgatcctgtaactctggatggtaagattctttgtaaataccaaaggggctacggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

219

Amino Acids

23.71

Weight (kDa)

5.48

Isoelectric Point (pI)

26.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27230 FvH4_2g27250 FvH4_2g27260 FvH4_2g27290 FvH4_2g27290 FvH4_3g22050 FvH4_7g19400 FvH4_7g19420 FvH4_7g26910 FvH4_7g26911 FvH4_7g26911 FvH4_7g27060 FvH4_7g27070
rosa_chinensis	RchiOBHm_Chr1g0373611 RchiOBHm_Chr1g0373961 RchiOBHm_Chr1g0374001 RchiOBHm_Chr1g0374041 RchiOBHm_Chr1g0374051 RchiOBHm_Chr6g0294671 RchiOBHm_Chr6g0294681 RchiOBHm_Chr6g0294701 RchiOBHm_Chr6g0294711 RchiOBHm_Chr6g0294721 RchiOBHm_Chr6g0294741
rosa_laevigata	RLG00000026787 RLG00000026813
rosa_multiflora	Rmu_co8111738.1_g000001 Rmu_sc0000475.1_g000008 Rmu_sc0000475.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283780 Rroxscaffold_4G00283790 Rroxscaffold_4G00284120 Rroxscaffold_7G00173070 Rroxscaffold_7G00173090
rosa_rugosa	Rorug01G0378400 Rorug01G0378400 Rorug01G0378400 Rorug01G0380200 Rorug05G0286100 Rorug06G0246400
rosa_samantha	Rh1AG390600 Rh1BG352200 Rh1BG354700 Rh1CG365000 Rh1CG367800 Rh1DG037500 Rh1DG382700 Rh1DG385400 Rh5BG368200 Rh5CG391500 Rh5DG382400 Rh6AG359000 Rh6AG359400 Rh6AG359500 Rh6AG359800 Rh6AG359900 Rh6AG360100 Rh6BG366300 Rh6BG366500 Rh6BG366600 Rh6CG373000 Rh6CG373200 Rh6CG373300 Rh6CG373400 Rh6CG373500 Rh6CG373700 Rh6DG359900 Rh6DG360100
rosa_wichuraiana	Rw1G034460 Rw1G034740 Rw5G033500 Rw5G033670 Rw6G031330 Rw6G031340 Rw6G031360 Rw6G031370 Rw6G031420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	383
AccIII	TCCGGA	1 cut(s)	323
AciI	CCGC	3 cut(s)	381, 383, 582
AclWI	GGATC	3 cut(s)	159, 535, 599
AcsI	RAATTY	3 cut(s)	160, 532, 576
AfaI	GTAC	2 cut(s)	273, 297
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	115, 209
AjnI	CCWGG	2 cut(s)	7, 466
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
AlwI	GGATC	3 cut(s)	159, 535, 599
AlwNI	CAGNNNCTG	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	323
AoxI	GGCC	2 cut(s)	456, 589
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	3 cut(s)	160, 532, 576
AspS9I	GGNCC	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	4 cut(s)	44, 220, 547, 614
BciT130I	CCWGG	2 cut(s)	9, 468
BfaI	CTAG	1 cut(s)	658
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	2 cut(s)	9, 468
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmrFI	CCNGG	2 cut(s)	9, 468
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	3 cut(s)	211, 321, 427
BmuI	ACTGGG	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	603
BsaJI	CCNNGG	2 cut(s)	178, 381
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	2 cut(s)	264, 456
Bse3DI	GCAATG	4 cut(s)	138, 395, 397, 555
Bse8I	GATNNNNATC	1 cut(s)	603
BseAI	TCCGGA	1 cut(s)	323
BseBI	CCWGG	2 cut(s)	9, 468
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	178, 381
BseGI	GGATG	2 cut(s)	377, 625
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMI	GCAATG	4 cut(s)	138, 395, 397, 555
BseNI	ACTGG	2 cut(s)	264, 456
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	1 cut(s)	490
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	2 cut(s)	458, 591
BshVI	ATCGAT	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	407
BsnI	GGCC	2 cut(s)	458, 591
Bsp119I	TTCGAA	1 cut(s)	277
Bsp13I	TCCGGA	1 cut(s)	323
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	91, 151, 527, 598, 604
BspACI	CCGC	3 cut(s)	381, 383, 582
BspANI	GGCC	2 cut(s)	458, 591
BspDI	ATCGAT	1 cut(s)	432
BspEI	TCCGGA	1 cut(s)	323
BspFNI	CGCG	1 cut(s)	383
BspPI	GGATC	3 cut(s)	159, 535, 599
BspT104I	TTCGAA	1 cut(s)	277
BsrDI	GCAATG	4 cut(s)	138, 395, 397, 555
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	264, 456
BssECI	CCNNGG	2 cut(s)	178, 381
BssMI	GATC	5 cut(s)	91, 151, 527, 598, 604
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	507
Bst2UI	CCWGG	2 cut(s)	9, 468
Bst4CI	ACNGT	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	18, 95
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	377, 625
BstFNI	CGCG	1 cut(s)	383
BstKTI	GATC	5 cut(s)	94, 154, 530, 601, 607
BstMBI	GATC	5 cut(s)	91, 151, 527, 598, 604
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	2 cut(s)	9, 468
BstSCI	CCNGG	2 cut(s)	7, 466
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	490
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	458, 591
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	377, 625
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	214
Cfr42I	CCGCGG	1 cut(s)	384
ClaI	ATCGAT	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	272, 296
CviAII	CATG	2 cut(s)	155, 353
CviJI	RGCY	9 cut(s)	54, 106, 235, 375, 458, 503, 591, 651, 657
CviKI_1	RGCY	9 cut(s)	54, 106, 235, 375, 458, 503, 591, 651, 657
CviQI	GTAC	2 cut(s)	272, 296
DdeI	CTNAG	2 cut(s)	18, 95
DpnI	GATC	5 cut(s)	93, 153, 529, 600, 606
DpnII	GATC	5 cut(s)	91, 151, 527, 598, 604
Eco130I	CCWWGG	1 cut(s)	178
Eco147I	AGGCCT	2 cut(s)	458, 591
Eco47I	GGWCC	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	7, 466
EcoT14I	CCWWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	2 cut(s)	158, 356
FaiI	YATR	6 cut(s)	81, 142, 156, 354, 491, 552
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	2 cut(s)	154, 352
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	2 cut(s)	364, 632
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	1 cut(s)	658
GluI	GCNGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	458, 591
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	2 cut(s)	158, 356
HinfI	GANTC	6 cut(s)	118, 290, 316, 356, 512, 628
HpaII	CCGG	1 cut(s)	324
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	58, 315
Hpy188III	TCNNGA	6 cut(s)	47, 89, 324, 509, 602, 617
Hpy8I	GTNNAC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	352, 395, 440, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	2 cut(s)	18, 95
Hsp92II	CATG	2 cut(s)	158, 356
Kpn2I	TCCGGA	1 cut(s)	323
KspI	CCGCGG	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	91, 151, 527, 598, 604
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	3 cut(s)	211, 321, 427
MaeI	CTAG	1 cut(s)	658
MaeIII	GTNAC	3 cut(s)	64, 70, 610
MalI	GATC	5 cut(s)	93, 153, 529, 600, 606
MboI	GATC	5 cut(s)	91, 151, 527, 598, 604
MboII	GAAGA	2 cut(s)	20, 127
MluCI	AATT	5 cut(s)	60, 160, 337, 532, 576
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	5 cut(s)	141, 176, 410, 448, 555
Mph1103I	ATGCAT	1 cut(s)	397
MroI	TCCGGA	1 cut(s)	323
MseI	TTAA	3 cut(s)	188, 336, 369
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	2 cut(s)	9, 468
MvaI	CCWGG	2 cut(s)	9, 468
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeII	GATC	5 cut(s)	91, 151, 527, 598, 604
NlaIII	CATG	2 cut(s)	158, 356
NsiI	ATGCAT	1 cut(s)	397
NspV	TTCGAA	1 cut(s)	277
PceI	AGGCCT	2 cut(s)	458, 591
PfeI	GAWTC	5 cut(s)	118, 290, 316, 512, 628
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	7, 466
PspGI	CCWGG	2 cut(s)	7, 466
PspPI	GGNCC	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	273, 297
RsaNI	GTAC	2 cut(s)	272, 296
RseI	CAYNNNNRTG	1 cut(s)	209
SacII	CCGCGG	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	188, 336, 369
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	5 cut(s)	91, 151, 527, 598, 604
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	9, 468
SetI	ASST	4 cut(s)	24, 108, 219, 484
SfaNI	GCATC	3 cut(s)	211, 321, 427
Sfr303I	CCGCGG	1 cut(s)	384
SfuI	TTCGAA	1 cut(s)	277
SgrBI	CCGCGG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	5 cut(s)	60, 160, 337, 532, 576
SseBI	AGGCCT	2 cut(s)	458, 591
SsiI	CCGC	3 cut(s)	381, 383, 582
SspMI	CTAG	1 cut(s)	658
StuI	AGGCCT	2 cut(s)	458, 591
StyD4I	CCNGG	2 cut(s)	7, 466
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	277, 359, 432
TasI	AATT	5 cut(s)	60, 160, 337, 532, 576
TatI	WGTACW	2 cut(s)	271, 295
TfiI	GAWTC	5 cut(s)	118, 290, 316, 512, 628
Tru1I	TTAA	3 cut(s)	188, 336, 369
Tru9I	TTAA	3 cut(s)	188, 336, 369
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	3 cut(s)	160, 532, 576
XspI	CTAG	1 cut(s)	658
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.