RchiOBHm_Chr1g0374051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000655
Physical Location & Seq
Forward (+)
62003609 .. 62004899
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59788

Sequence Viewer

Length: 408 bp
ATGGGTCGCGGTCATGGTCATGGTCATGGTCATGGTCGTGGTCGCCGTTCACGTTCACGTTCACGTTCAGGTTCAGGAGGAGGATCGCATTCCAGAAAATCAAGTGCAGCTGGTCCTCGATTGAGTCCTTGCGAGCAACAAGAGGATCTTGTCCAGGGTTATCCTGGCGCTACTGCTATCGTTGCTCGTCCAAATTCACATGGGTCACACGGATCTGGGTCTGGGCGCGGGTCTCTTGGTGATGAGTATCCGTATGAGGACTGCCAAAGATTTCTCGATTACCTTTATGATGCAACACGTTTGTGTGGGAGCGATTGTACCAGTGCTGTAGCAACTCGCAGTTACGTAGAGCTCTTTTGTGGTATTAAGGTGTTACCTGATGAGTTAGAGAAGAAGGAAGGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.38

Weight (kDa)

8.67

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 9, 228
AciI CCGC 2 cut(s) 9, 228
AclWI GGATC 3 cut(s) 91, 153, 220
AcsI RAATTY 1 cut(s) 193
AfaI GTAC 1 cut(s) 319
AflIII ACRYGT 1 cut(s) 296
AjnI CCWGG 2 cut(s) 153, 163
AleI CACNNNNGTG 1 cut(s) 301
AluBI AGCT 2 cut(s) 110, 352
AluI AGCT 2 cut(s) 110, 352
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 3 cut(s) 91, 153, 220
AoxI GGCC 1 cut(s) 400
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 193
AspLEI GCGC 2 cut(s) 170, 228
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 119
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 155, 165
BciVI GTATCC 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 171
BfuI GTATCC 1 cut(s) 258
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 2 cut(s) 155, 165
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 155, 165
BmsI GCATC 1 cut(s) 280
BsaAI YACGTR 1 cut(s) 346
BsaBI GATNNNNATC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bse1I ACTGG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 2 cut(s) 155, 165
BseDI CCNNGG 1 cut(s) 154
BseJI GATNNNNATC 1 cut(s) 246
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 2 cut(s) 9, 228
BshFI GGCC 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 1 cut(s) 402
Bso31I GGTCTC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 3 cut(s) 83, 145, 212
BspACI CCGC 2 cut(s) 9, 228
BspANI GGCC 1 cut(s) 402
BspFNI CGCG 2 cut(s) 9, 228
BspPI GGATC 3 cut(s) 91, 153, 220
BspTNI GGTCTC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 3 cut(s) 83, 145, 212
Bst2UI CCWGG 2 cut(s) 155, 165
BstBAI YACGTR 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 134
BstFNI CGCG 2 cut(s) 9, 228
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 2 cut(s) 170, 228
BstKTI GATC 3 cut(s) 86, 148, 215
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 3 cut(s) 83, 145, 212
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 2 cut(s) 155, 165
BstSCI CCNGG 2 cut(s) 153, 163
BstSFI CTRYAG 1 cut(s) 327
BstSNI TACGTA 1 cut(s) 346
BstUI CGCG 2 cut(s) 9, 228
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 2 cut(s) 145, 212
BstYI RGATCY 2 cut(s) 145, 212
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 328, 403
Cac8I GCNNGC 1 cut(s) 134
CfoI GCGC 2 cut(s) 170, 228
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 318
CviAII CATG 5 cut(s) 14, 20, 26, 32, 200
CviJI RGCY 3 cut(s) 110, 352, 402
CviKI_1 RGCY 3 cut(s) 110, 352, 402
CviQI GTAC 1 cut(s) 318
DpnI GATC 3 cut(s) 85, 147, 214
DpnII GATC 3 cut(s) 83, 145, 212
Ecl136II GAGCTC 1 cut(s) 352
Eco105I TACGTA 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 153, 163
EcoT38I GRGCYC 1 cut(s) 354
FaeI CATG 5 cut(s) 17, 23, 29, 35, 203
FaiI YATR 7 cut(s) 15, 21, 27, 33, 201, 255, 288
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 5 cut(s) 13, 19, 25, 31, 199
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 1 cut(s) 108
GlaI GCGC 2 cut(s) 169, 227
GluI GCNGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 402
HhaI GCGC 2 cut(s) 170, 228
Hin1II CATG 5 cut(s) 17, 23, 29, 35, 203
Hin6I GCGC 2 cut(s) 168, 226
HinP1I GCGC 2 cut(s) 168, 226
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 3 cut(s) 50, 56, 62
Hpy188III TCNNGA 3 cut(s) 75, 93, 275
Hpy8I GTNNAC 3 cut(s) 50, 56, 62
HpyAV CCTTC 2 cut(s) 388, 392
HpyCH4IV ACGT 5 cut(s) 52, 58, 64, 298, 345
HpyCH4V TGCA 2 cut(s) 107, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpySE526I ACGT 5 cut(s) 52, 58, 64, 298, 345
Hsp92II CATG 5 cut(s) 17, 23, 29, 35, 203
HspAI GCGC 2 cut(s) 168, 226
Kzo9I GATC 3 cut(s) 83, 145, 212
LmnI GCTCC 1 cut(s) 309
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 280
MaeII ACGT 5 cut(s) 52, 58, 64, 298, 345
MaeIII GTNAC 3 cut(s) 204, 341, 372
MalI GATC 3 cut(s) 85, 147, 214
MboI GATC 3 cut(s) 83, 145, 212
MboII GAAGA 1 cut(s) 403
MflI RGATCY 2 cut(s) 145, 212
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 1 cut(s) 193
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 5 cut(s) 71, 74, 126, 136, 250
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 5 cut(s) 18, 24, 30, 36, 301
MspA1I CMGCKG 1 cut(s) 110
MspR9I CCNGG 2 cut(s) 155, 165
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 2 cut(s) 155, 165
MvnI CGCG 2 cut(s) 9, 228
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 3 cut(s) 83, 145, 212
NlaIII CATG 5 cut(s) 17, 23, 29, 35, 203
NmuCI GTSAC 1 cut(s) 204
OliI CACNNNNGTG 1 cut(s) 301
PcsI WCGNNNNNNNCGW 2 cut(s) 43, 49
PctI GAATGC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 153, 163
PspGI CCWGG 2 cut(s) 153, 163
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 2 cut(s) 145, 212
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
RseI CAYNNNNRTG 5 cut(s) 18, 24, 30, 36, 301
SacI GAGCTC 1 cut(s) 354
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 3 cut(s) 83, 145, 212
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 2 cut(s) 155, 165
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 327
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 5 cut(s) 18, 24, 30, 36, 301
SnaBI TACGTA 1 cut(s) 346
Sse9I AATT 1 cut(s) 193
SsiI CCGC 2 cut(s) 9, 228
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 2 cut(s) 153, 163
TaiI ACGT 5 cut(s) 55, 61, 67, 301, 348
TaqI TCGA 2 cut(s) 118, 276
TasI AATT 1 cut(s) 193
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 204
TspGWI ACGGA 2 cut(s) 225, 240
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.