Rh6CG373500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000655
Physical Location & Seq
Reverse (-)
55937127 .. 55938089
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG373500.1

Sequence Viewer

Length: 405 bp
ATGGCTGGTGGTGCCCGTTGCGGTGTCCGTTCAGGCGGAGGTTTGAGATCGTCCGGAAGAATTGGAGGAAAATCCACCGGCCTAAGGTCAGGTCCCAGATTAAGTACCGGTGAACAACAAGATGACCTTGTAAGGAGATATCCTGGTGCAGCTTATATTGTTACTCGTCGAAGATCAGAACCTACCGCTGGCGCTGGCGTTGTAGCTTCTGACGAAAATTATCCGTTTGATTACTGCCAGAGGCTTCTGGATTACTACTATGATACAACACGCTTGTGTGGGAGCGACTATACCGATAGTGTATTATATCGCAACGCTATACTTAATATTTGTGGTATTCAGGTGTCACCTGATGAGTTGGACAAGAAGGCCTCTACTTCCGCCAACGCTGCAGCTCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.35

Weight (kDa)

8.73

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 4 cut(s) 21, 36, 186, 381
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 84, 188
AgeI ACCGGT 1 cut(s) 107
AjnI CCWGG 1 cut(s) 142
AleI CACNNNNGTG 1 cut(s) 274
AluBI AGCT 3 cut(s) 152, 206, 395
AluI AGCT 3 cut(s) 152, 206, 395
Aor13HI TCCGGA 1 cut(s) 53
AoxI GGCC 2 cut(s) 79, 369
ApeKI GCWGC 3 cut(s) 149, 389, 392
AsiGI ACCGGT 1 cut(s) 107
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 122, 339
AvaII GGWCC 1 cut(s) 92
AxyI CCTNAGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 161, 376
BciT130I CCWGG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 195
BisI GCNGC 3 cut(s) 150, 390, 393
BlsI GCNGC 3 cut(s) 151, 391, 394
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 13, 94
BmrFI CCNGG 1 cut(s) 144
BsaWI WCCGGW 2 cut(s) 53, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 188
Bse118I RCCGGY 2 cut(s) 77, 107
Bse21I CCTNAGG 1 cut(s) 83
BseAI TCCGGA 1 cut(s) 53
BseBI CCWGG 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 84, 188
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 2 cut(s) 161, 376
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 2 cut(s) 81, 371
BshNI GGYRCC 1 cut(s) 11
BshTI ACCGGT 1 cut(s) 107
BsiSI CCGG 3 cut(s) 54, 78, 108
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 84, 188
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 2 cut(s) 81, 371
Bsp1286I GDGCHC 1 cut(s) 16
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 2 cut(s) 47, 173
BspACI CCGC 4 cut(s) 21, 36, 186, 381
BspANI GGCC 2 cut(s) 81, 371
BspEI TCCGGA 1 cut(s) 53
BspLI GGNNCC 2 cut(s) 13, 94
BspMAI CTGCAG 1 cut(s) 394
BspT107I GGYRCC 1 cut(s) 11
BsrFI RCCGGY 2 cut(s) 77, 107
BssAI RCCGGY 2 cut(s) 77, 107
BssMI GATC 2 cut(s) 47, 173
Bst2UI CCWGG 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 190, 196
BstDEI CTNAG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 2 cut(s) 50, 176
BstMBI GATC 2 cut(s) 47, 173
BstMWI GCNNNNNNNGC 2 cut(s) 11, 389
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 390
BstSLI GKGCMC 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 161, 376
Bsu36I CCTNAGG 1 cut(s) 83
BsuRI GGCC 2 cut(s) 81, 371
Cac8I GCNNGC 2 cut(s) 190, 196
CfoI GCGC 1 cut(s) 194
Cfr10I RCCGGY 2 cut(s) 77, 107
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 105
CspAI ACCGGT 1 cut(s) 107
CviJI RGCY 7 cut(s) 5, 81, 152, 206, 244, 371, 395
CviKI_1 RGCY 7 cut(s) 5, 81, 152, 206, 244, 371, 395
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 83
DpnI GATC 2 cut(s) 49, 175
DpnII GATC 2 cut(s) 47, 173
EciI GGCGGA 2 cut(s) 51, 370
Eco147I AGGCCT 1 cut(s) 371
Eco32I GATATC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 92
Eco81I CCTNAGG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 142
EcoRV GATATC 1 cut(s) 140
FaiI YATR 5 cut(s) 156, 261, 291, 307, 320
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 150, 390, 393
Fsp4HI GCNGC 3 cut(s) 150, 390, 393
GlaI GCGC 1 cut(s) 193
GluI GCNGC 3 cut(s) 150, 390, 393
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 2 cut(s) 81, 371
HapII CCGG 3 cut(s) 54, 78, 108
HhaI GCGC 1 cut(s) 194
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HpaII CCGG 3 cut(s) 54, 78, 108
HphI GGTGA 2 cut(s) 122, 339
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 178, 211
Hpy188III TCNNGA 2 cut(s) 54, 248
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 361
HpyCH4V TGCA 2 cut(s) 149, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 389
HpyF3I CTNAG 1 cut(s) 83
HspAI GCGC 1 cut(s) 192
Kpn2I TCCGGA 1 cut(s) 53
Kzo9I GATC 2 cut(s) 47, 173
LmnI GCTCC 1 cut(s) 282
Lsp1109I GCAGC 2 cut(s) 161, 376
MaeIII GTNAC 2 cut(s) 160, 345
MalI GATC 2 cut(s) 49, 175
MboI GATC 2 cut(s) 47, 173
MboII GAAGA 2 cut(s) 69, 183
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 60, 217
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 4 cut(s) 32, 59, 234, 382
MroI TCCGGA 1 cut(s) 53
MseI TTAA 2 cut(s) 101, 324
MslI CAYNNNNRTG 1 cut(s) 274
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 3 cut(s) 54, 78, 108
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 11, 389
NdeII GATC 2 cut(s) 47, 173
NlaIV GGNNCC 2 cut(s) 13, 94
NmuCI GTSAC 1 cut(s) 345
OliI CACNNNNGTG 1 cut(s) 274
PceI AGGCCT 1 cut(s) 371
PinAI ACCGGT 1 cut(s) 107
PkrI GCNGC 3 cut(s) 151, 391, 394
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 13, 94
PspPI GGNCC 1 cut(s) 92
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 1 cut(s) 394
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 274
SaqAI TTAA 2 cut(s) 101, 324
SatI GCNGC 3 cut(s) 150, 390, 393
Sau3AI GATC 2 cut(s) 47, 173
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 274
Sse9I AATT 2 cut(s) 60, 217
SseBI AGGCCT 1 cut(s) 371
SsiI CCGC 4 cut(s) 21, 36, 186, 381
SspI AATATT 1 cut(s) 328
StuI AGGCCT 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 142
TaqI TCGA 1 cut(s) 169
TasI AATT 2 cut(s) 60, 217
Tru1I TTAA 2 cut(s) 101, 324
Tru9I TTAA 2 cut(s) 101, 324
TseFI GTSAC 1 cut(s) 345
TseI GCWGC 3 cut(s) 149, 389, 392
Tsp45I GTSAC 1 cut(s) 345
TspGWI ACGGA 2 cut(s) 17, 213
VpaK11BI GGWCC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.