RchiOBHm_Chr6g0294741

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000655
Physical Location & Seq
Reverse (-)
56918918 .. 56920444
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26454

Sequence Viewer

Length: 327 bp
ATGGGTCTTTCCGGTTCTTCTCTTCGCCGTTCCGAAGGTCTTACTCAAGTTCAAGACGAGCTTGTCAAGAAATATGCTTCCGGTGCTGTGGTTATTCTGACCAGAACTCCTCCGAGATCAGCTGATGACTTTAGGCGGGAGTATCTTCTGCAGAAATACCCTACTTGTGAGGAATGGATTCAACGGTTCTACAAGTTACAACGCCTCTGTAGGAGCAATTGCCCTGAATGGTCCAAGATAAGGATTGAGACCTGTGGCCTTGAGGTTTGCCCTGAAAAGTTACTGAATGACTCGACTTCCGTTAGCTTGCTAATGACTCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.46

Weight (kDa)

8.66

Isoelectric Point (pI)

60.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AciI CCGC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 2 cut(s) 53, 182
AluBI AGCT 3 cut(s) 61, 122, 306
AluI AGCT 3 cut(s) 61, 122, 306
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 231
AvaII GGWCC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 1 cut(s) 325
BfmI CTRYAG 2 cut(s) 149, 208
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 30, 281
BsaI GGTCTC 1 cut(s) 242
BsaWI WCCGGW 2 cut(s) 11, 80
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 99
BshFI GGCC 1 cut(s) 258
BsiSI CCGG 2 cut(s) 12, 81
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 242
BssMI GATC 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 308
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSFI CTRYAG 2 cut(s) 149, 208
BsuRI GGCC 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 231
CviJI RGCY 4 cut(s) 61, 122, 258, 306
CviKI_1 RGCY 4 cut(s) 61, 122, 258, 306
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 231
FaiI YATR 1 cut(s) 75
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FauI CCCGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 258
HapII CCGG 2 cut(s) 12, 81
HinfI GANTC 3 cut(s) 178, 290, 316
HpaII CCGG 2 cut(s) 12, 81
Hpy188I TCNGA 3 cut(s) 34, 99, 114
Hpy188III TCNNGA 2 cut(s) 53, 67
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 6 cut(s) 25, 94, 115, 237, 265, 285
MaeI CTAG 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 195, 279
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 3 cut(s) 9, 14, 137
MfeI CAATTG 1 cut(s) 217
MluCI AATT 1 cut(s) 217
MlyI GAGTC 2 cut(s) 284, 310
MnlI CCTC 4 cut(s) 120, 163, 215, 256
MroXI GAANNNNTTC 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 2 cut(s) 12, 81
MunI CAATTG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 178
PleI GAGTC 2 cut(s) 284, 310
PpsI GAGTC 2 cut(s) 284, 310
PspPI GGNCC 1 cut(s) 231
PstI CTGCAG 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 122
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 2 cut(s) 284, 310
SetI ASST 6 cut(s) 40, 63, 124, 254, 267, 308
SfcI CTRYAG 2 cut(s) 149, 208
SinI GGWCC 1 cut(s) 231
SmlI CTYRAG 2 cut(s) 45, 260
SmoI CTYRAG 2 cut(s) 45, 260
Sse9I AATT 1 cut(s) 217
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 325
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 293
TasI AATT 1 cut(s) 217
TfiI GAWTC 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.