FvH4_7g26911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000655
Physical Location & Seq
Reverse (-)
20209705 .. 20211471
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26911.t1

Sequence Viewer

Length: 477 bp
ATGGCTCAATCAAATCCGGAAGAATCCGGTTTGTTCTCCATGTTTAGTGATTTGTTTGCCGAAAAACCACAACCACAACCAACATCCCAATCAAAACCACCACCGCAACCAGACTCACAACCACAACCAGAATCCCAACCAAAACCAAAACCACCACCACAACGCAAACTAAAGAGTATTTTTAATTCCAAAAAAAAAGAAGGTACTCCTACTCCTAGTGAACGTCAGGATGAACTTGTGAGGAAATTTCCTGGGTCCAAGATTAGTCGTCGTCCAAATCCAATGGAAGAAGCCGATGATACAACTTACATCAAGTTTCCAAATGAAAACTGCGAGAGATATATGAAAAAATTCTATGAGGCAGTGAGACTTTACGGGAGGGATTGTGAGATTAATGGCACTACTTGTTTATATACATCAATAATACGCAGATCTTGTGGTATTGCAGTATATTACCCTGAAGACAATAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.15

Weight (kDa)

8.99

Isoelectric Point (pI)

70.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 1 cut(s) 104
AcsI RAATTY 2 cut(s) 245, 350
AfaI GTAC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 361
Aor13HI TCCGGA 1 cut(s) 16
ApoI RAATTY 2 cut(s) 245, 350
AseI ATTAAT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 255
AvaII GGWCC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 468
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 1 cut(s) 216
BglII AGATCT 1 cut(s) 431
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 251
BsaWI WCCGGW 2 cut(s) 16, 26
BsaXI ACNNNNNCTCC 4 cut(s) 196, 226, 370, 400
BseAI TCCGGA 1 cut(s) 16
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 2 cut(s) 83, 235
BsiSI CCGG 2 cut(s) 17, 27
BsmAI GTCTC 1 cut(s) 361
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 431
BspACI CCGC 1 cut(s) 104
BspEI TCCGGA 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 83, 235
BstKTI GATC 1 cut(s) 434
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 1 cut(s) 431
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BtsCI GGATG 2 cut(s) 83, 235
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 204
CviAII CATG 1 cut(s) 40
CviJI RGCY 2 cut(s) 5, 293
CviKI_1 RGCY 2 cut(s) 5, 293
CviQI GTAC 1 cut(s) 204
DpnI GATC 1 cut(s) 433
DpnII GATC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 43
FaiI YATR 7 cut(s) 41, 342, 344, 357, 412, 414, 451
FatI CATG 1 cut(s) 39
FokI GGATG 2 cut(s) 70, 242
FspBI CTAG 1 cut(s) 216
HapII CCGG 2 cut(s) 17, 27
Hin1II CATG 1 cut(s) 43
HinfI GANTC 3 cut(s) 23, 113, 131
HpaII CCGG 2 cut(s) 17, 27
Hpy166II GTNNAC 1 cut(s) 221
Hpy188III TCNNGA 2 cut(s) 17, 227
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 446
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 1 cut(s) 43
Kpn2I TCCGGA 1 cut(s) 16
Kzo9I GATC 1 cut(s) 431
LpnPI CCDG 8 cut(s) 30, 40, 123, 141, 212, 237, 264, 471
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 223
MalI GATC 1 cut(s) 433
MboI GATC 1 cut(s) 431
MboII GAAGA 3 cut(s) 32, 299, 473
MflI RGATCY 1 cut(s) 431
MluCI AATT 3 cut(s) 184, 245, 350
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 3 cut(s) 234, 352, 372
MroI TCCGGA 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 2 cut(s) 183, 393
MspI CCGG 2 cut(s) 17, 27
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
NdeII GATC 1 cut(s) 431
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 2 cut(s) 23, 131
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PshBI ATTAAT 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 431
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SaqAI TTAA 2 cut(s) 183, 393
Sau3AI GATC 1 cut(s) 431
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 252
SetI ASST 2 cut(s) 205, 226
SinI GGWCC 1 cut(s) 255
Sse9I AATT 3 cut(s) 184, 245, 350
SsiI CCGC 1 cut(s) 104
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 250
TaiI ACGT 1 cut(s) 226
TasI AATT 3 cut(s) 184, 245, 350
TfiI GAWTC 2 cut(s) 23, 131
Tru1I TTAA 2 cut(s) 183, 393
Tru9I TTAA 2 cut(s) 183, 393
TscAI CASTG 1 cut(s) 369
TspDTI ATGAA 3 cut(s) 246, 339, 359
TspRI CASTG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 255
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 2 cut(s) 245, 350
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.