FvH4_7g26910

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000655
Physical Location & Seq
Reverse (-)
20201823 .. 20205146
3324 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26910.t1

Sequence Viewer

Length: 717 bp
ATGGCTCAATCGAATTCTCAAGACTCCGGTTTGATCTCCATATTATCTAATTTATTCGTCGACAAACCAAAACCACCACCACAACCAGCATCACAGAGTGGACTTGCTACTCGACGTCAGGATGAACTTGTGAAGAAATTTCCTGGCTCAAAGATTGTTCGTCGTCCATATAATCGTAACAGTACTTTGTTTCCTAGTAGTTCATGCGATTATTATATGGAAAGTTTCTATGAGTATGTGCGGGATTCTAAGATGGATTACAAAAGTAGGACATTGAAAGATACTGTACGCAGGAACTGTGAACCCACTTCCATTCACCCTCCCGGCGTCCCGATTCCGGCGCCGGATTTCGAGACGACCCATTTGAAGAATGCGTGTTATGGACATGGGCTTGTGGAGACTCAGCACCAATCTATCGATTTGGGTACTGGGACGGGTCAGGCACCGGTTTATGAGGATGAACTTGTGAAGAGATTTCCTGGCTCAAAGATCGATCGTCGTCCATACGATCCTCACAGTACTTTATTTCCAGATAGTTCATGCGCGCATTATATGGAAGAATTCTATGAGGCAGCGCAGGATTCTATGATGATAAATTTTGATATGTGGTTTGATCGAAGATTTATACGCCAGAAATGTGGTATTAAAGTTAAACCCGACAGGTTCAAACTTTGGAGGTCCAAATCAAGAGATTTGATAGAAAGGCTAGGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

239

Amino Acids

27.48

Weight (kDa)

8.87

Isoelectric Point (pI)

71.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 118
AccB1I GGYRCC 2 cut(s) 340, 442
AccI GTMKAC 1 cut(s) 60
AccII CGCG 1 cut(s) 545
AciI CCGC 1 cut(s) 241
AclWI GGATC 1 cut(s) 503
AcsI RAATTY 4 cut(s) 13, 137, 560, 595
AcyI GRCGYC 3 cut(s) 115, 327, 341
AdeI CACNNNGTG 1 cut(s) 98
AfaI GTAC 4 cut(s) 184, 288, 427, 520
AfiI CCNNNNNNNGG 1 cut(s) 337
AgeI ACCGGT 1 cut(s) 445
AgsI TTSAA 3 cut(s) 277, 367, 667
AjnI CCWGG 2 cut(s) 142, 478
Alw26I GTCTC 2 cut(s) 347, 392
AlwI GGATC 1 cut(s) 503
AlwNI CAGNNNCTG 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 4 cut(s) 13, 137, 560, 595
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
AsiGI ACCGGT 1 cut(s) 445
AspLEI GCGC 4 cut(s) 343, 545, 547, 577
AspS9I GGNCC 1 cut(s) 678
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 308
AvaII GGWCC 1 cut(s) 678
BanI GGYRCC 2 cut(s) 340, 442
BbvI GCAGC 1 cut(s) 584
BccI CCATC 1 cut(s) 247
BciT130I CCWGG 2 cut(s) 144, 480
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 347, 392
BfaI CTAG 2 cut(s) 195, 707
BfoI RGCGCY 1 cut(s) 344
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
BmcAI AGTACT 2 cut(s) 184, 520
Bme1390I CCNGG 3 cut(s) 144, 324, 480
Bme18I GGWCC 1 cut(s) 678
BmgT120I GGNCC 1 cut(s) 678
BmiI GGNNCC 2 cut(s) 342, 444
BmrFI CCNGG 3 cut(s) 144, 324, 480
BmrI ACTGGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 438
BpuMI CCSGG 1 cut(s) 324
Bsa29I ATCGAT 2 cut(s) 417, 492
BsaHI GRCGYC 3 cut(s) 115, 327, 341
BsaWI WCCGGW 2 cut(s) 26, 445
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 2 cut(s) 144, 480
BseCI ATCGAT 2 cut(s) 417, 492
BseGI GGATG 2 cut(s) 127, 463
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 433
BsePI GCGCGC 1 cut(s) 543
BseXI GCAGC 1 cut(s) 584
Bsh1236I CGCG 1 cut(s) 545
Bsh1285I CGRYCG 1 cut(s) 496
BshNI GGYRCC 2 cut(s) 340, 442
BshTI ACCGGT 1 cut(s) 445
BshVI ATCGAT 2 cut(s) 417, 492
BsiEI CGRYCG 1 cut(s) 496
BsiSI CCGG 5 cut(s) 27, 324, 338, 344, 446
BslFI GGGAC 2 cut(s) 314, 445
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 2 cut(s) 347, 392
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 2 cut(s) 314, 445
BsmI GAATGC 1 cut(s) 376
Bsp143I GATC 5 cut(s) 33, 489, 493, 508, 613
BspACI CCGC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 415
BspDI ATCGAT 2 cut(s) 417, 492
BspFNI CGCG 1 cut(s) 545
BspLI GGNNCC 2 cut(s) 342, 444
BspPI GGATC 1 cut(s) 503
BspT107I GGYRCC 2 cut(s) 340, 442
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 445
BssHII GCGCGC 1 cut(s) 543
BssMI GATC 5 cut(s) 33, 489, 493, 508, 613
BssNI GRCGYC 3 cut(s) 115, 327, 341
Bst2UI CCWGG 2 cut(s) 144, 480
Bst4CI ACNGT 4 cut(s) 182, 286, 299, 518
Bst6I CTCTTC 1 cut(s) 464
BstACI GRCGYC 3 cut(s) 115, 327, 341
BstC8I GCNNGC 1 cut(s) 545
BstDEI CTNAG 2 cut(s) 249, 402
BstF5I GGATG 2 cut(s) 127, 463
BstFNI CGCG 1 cut(s) 545
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 4 cut(s) 343, 545, 547, 577
BstKTI GATC 5 cut(s) 36, 492, 496, 511, 616
BstMAI GTCTC 2 cut(s) 347, 392
BstMBI GATC 5 cut(s) 33, 489, 493, 508, 613
BstMCI CGRYCG 1 cut(s) 496
BstNI CCWGG 2 cut(s) 144, 480
BstSCI CCNGG 3 cut(s) 142, 322, 478
BstUI CGCG 1 cut(s) 545
BstV1I GCAGC 1 cut(s) 584
BstXI CCANNNNNNTGG 1 cut(s) 638
Bsu15I ATCGAT 2 cut(s) 417, 492
BsuTUI ATCGAT 2 cut(s) 417, 492
BtsCI GGATG 2 cut(s) 127, 463
Cac8I GCNNGC 1 cut(s) 545
CaiI CAGNNNCTG 1 cut(s) 297
CfoI GCGC 4 cut(s) 343, 545, 547, 577
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 1 cut(s) 678
ClaI ATCGAT 2 cut(s) 417, 492
CseI GACGC 1 cut(s) 316
Csp6I GTAC 4 cut(s) 183, 287, 426, 519
CspAI ACCGGT 1 cut(s) 445
CviAII CATG 3 cut(s) 204, 386, 540
CviJI RGCY 5 cut(s) 5, 147, 391, 483, 706
CviKI_1 RGCY 5 cut(s) 5, 147, 391, 483, 706
CviQI GTAC 4 cut(s) 183, 287, 426, 519
DdeI CTNAG 2 cut(s) 249, 402
DinI GGCGCC 1 cut(s) 342
DpnI GATC 5 cut(s) 35, 491, 495, 510, 615
DpnII GATC 5 cut(s) 33, 489, 493, 508, 613
DraIII CACNNNGTG 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 464
EarI CTCTTC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 678
EcoRI GAATTC 2 cut(s) 13, 560
EcoRII CCWGG 2 cut(s) 142, 478
EgeI GGCGCC 1 cut(s) 342
EheI GGCGCC 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 3 cut(s) 207, 389, 543
FaqI GGGAC 2 cut(s) 314, 445
FatI CATG 3 cut(s) 203, 385, 539
FauI CCCGC 1 cut(s) 234
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 2 cut(s) 134, 470
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 2 cut(s) 195, 707
GlaI GCGC 4 cut(s) 342, 544, 546, 576
GluI GCNGC 1 cut(s) 573
HaeII RGCGCY 1 cut(s) 344
HapII CCGG 5 cut(s) 27, 324, 338, 344, 446
HgaI GACGC 1 cut(s) 316
HhaI GCGC 4 cut(s) 343, 545, 547, 577
Hin1I GRCGYC 3 cut(s) 115, 327, 341
Hin1II CATG 3 cut(s) 207, 389, 543
Hin6I GCGC 4 cut(s) 341, 543, 545, 575
HinP1I GCGC 4 cut(s) 341, 543, 545, 575
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 5 cut(s) 23, 245, 334, 400, 581
HpaII CCGG 5 cut(s) 27, 324, 338, 344, 446
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 3 cut(s) 61, 101, 302
Hpy188III TCNNGA 6 cut(s) 20, 119, 331, 352, 530, 687
Hpy8I GTNNAC 3 cut(s) 61, 101, 302
Hpy99I CGWCG 4 cut(s) 62, 117, 165, 501
HpyCH4III ACNGT 4 cut(s) 182, 286, 299, 518
HpyCH4IV ACGT 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 249, 402
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 3 cut(s) 115, 327, 341
Hsp92II CATG 3 cut(s) 207, 389, 543
HspAI GCGC 4 cut(s) 341, 543, 545, 575
KasI GGCGCC 1 cut(s) 340
Kzo9I GATC 5 cut(s) 33, 489, 493, 508, 613
Lsp1109I GCAGC 1 cut(s) 584
LweI GCATC 1 cut(s) 98
MaeI CTAG 2 cut(s) 195, 707
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 176
MalI GATC 5 cut(s) 35, 491, 495, 510, 615
MboI GATC 5 cut(s) 33, 489, 493, 508, 613
MboII GAAGA 5 cut(s) 145, 379, 481, 569, 630
MluCI AATT 5 cut(s) 13, 49, 137, 560, 595
Mly113I GGCGCC 1 cut(s) 341
MlyI GAGTC 2 cut(s) 17, 394
MnlI CCTC 5 cut(s) 330, 448, 522, 562, 669
MseI TTAA 2 cut(s) 645, 651
MspI CCGG 5 cut(s) 27, 324, 338, 344, 446
MspR9I CCNGG 3 cut(s) 144, 324, 480
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 2 cut(s) 144, 480
MvnI CGCG 1 cut(s) 545
NarI GGCGCC 1 cut(s) 341
NciI CCSGG 1 cut(s) 324
NdeII GATC 5 cut(s) 33, 489, 493, 508, 613
NlaIII CATG 3 cut(s) 207, 389, 543
NlaIV GGNNCC 2 cut(s) 342, 444
PauI GCGCGC 1 cut(s) 543
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 3 cut(s) 245, 334, 581
PinAI ACCGGT 1 cut(s) 445
PkrI GCNGC 1 cut(s) 574
Ple19I CGATCG 1 cut(s) 496
PleI GAGTC 2 cut(s) 17, 394
PluTI GGCGCC 1 cut(s) 344
PpsI GAGTC 2 cut(s) 17, 394
Psp6I CCWGG 2 cut(s) 142, 478
PspGI CCWGG 2 cut(s) 142, 478
PspN4I GGNNCC 2 cut(s) 342, 444
PspPI GGNCC 1 cut(s) 678
PstNI CAGNNNCTG 1 cut(s) 297
PteI GCGCGC 1 cut(s) 543
PvuI CGATCG 1 cut(s) 496
RsaI GTAC 4 cut(s) 184, 288, 427, 520
RsaNI GTAC 4 cut(s) 183, 287, 426, 519
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 645, 651
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 5 cut(s) 33, 489, 493, 508, 613
Sau96I GGNCC 1 cut(s) 678
ScaI AGTACT 2 cut(s) 184, 520
SchI GAGTC 2 cut(s) 17, 394
ScrFI CCNGG 3 cut(s) 144, 324, 480
SetI ASST 3 cut(s) 118, 665, 680
SfaNI GCATC 1 cut(s) 98
SfoI GGCGCC 1 cut(s) 342
SinI GGWCC 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 5 cut(s) 13, 49, 137, 560, 595
SsiI CCGC 1 cut(s) 241
SspDI GGCGCC 1 cut(s) 340
SspMI CTAG 2 cut(s) 195, 707
StyD4I CCNGG 3 cut(s) 142, 322, 478
TaaI ACNGT 4 cut(s) 182, 286, 299, 518
TaiI ACGT 1 cut(s) 118
TaqI TCGA 7 cut(s) 11, 60, 112, 351, 417, 492, 616
TasI AATT 5 cut(s) 13, 49, 137, 560, 595
TatI WGTACW 2 cut(s) 182, 518
TfiI GAWTC 3 cut(s) 245, 334, 581
Tru1I TTAA 2 cut(s) 645, 651
Tru9I TTAA 2 cut(s) 645, 651
TseI GCWGC 1 cut(s) 572
TspDTI ATGAA 4 cut(s) 138, 192, 474, 528
VpaK11BI GGWCC 1 cut(s) 678
XapI RAATTY 4 cut(s) 13, 137, 560, 595
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 2 cut(s) 195, 707
ZraI GACGTC 1 cut(s) 116
ZrmI AGTACT 2 cut(s) 184, 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.