Rh1DG382700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000655
Physical Location & Seq
Reverse (-)
60361410 .. 60362996
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG382700.1

Sequence Viewer

Length: 294 bp
ATGGCTCAATCAAGTTCGGAAGGTACTCCTAGTCAACGTCAGGATGAGCTTGTGAAGAAATTTCCGGGGTCAAAGATTATTCGTCGTCCAAATCCAATGGAAGAAGCCGATGATTCAACTTACATTAAATTTCCAGAACATGACTGCGGGAATTATATGGAAAGATTCTATGAGGCAGCGCGTCTTTACGGGAAGGATTGTAGGATTGATAAAACTAGTTGCGTGCATCAAAGAATGATACGCAAGAGTTGTGGTATTGAAGTTTATTACCCTGCAGATCAGTTAAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.28

Weight (kDa)

7.65

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 181
AciI CCGC 1 cut(s) 147
AcsI RAATTY 2 cut(s) 59, 128
AfaI GTAC 1 cut(s) 25
AgsI TTSAA 2 cut(s) 117, 260
AhlI ACTAGT 1 cut(s) 215
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 2 cut(s) 59, 128
AspLEI GCGC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 66
BbvI GCAGC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 66
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 2 cut(s) 30, 216
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 181
BsiSI CCGG 1 cut(s) 65
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 1 cut(s) 147
BspFNI CGCG 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 224
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 224
CfoI GCGC 1 cut(s) 181
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 24
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 1 cut(s) 140
CviJI RGCY 3 cut(s) 5, 49, 107
CviKI_1 RGCY 3 cut(s) 5, 49, 107
CviQI GTAC 1 cut(s) 24
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
FaeI CATG 1 cut(s) 143
FaiI YATR 4 cut(s) 141, 156, 158, 171
FatI CATG 1 cut(s) 139
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 30, 216
GlaI GCGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 177
HapII CCGG 1 cut(s) 65
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 143
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HincII GTYRAC 1 cut(s) 35
HindII GTYRAC 1 cut(s) 35
HinfI GANTC 2 cut(s) 113, 165
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 41, 134
Hpy8I GTNNAC 1 cut(s) 35
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 2 cut(s) 14, 187
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 2 cut(s) 226, 275
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 1 cut(s) 143
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 1 cut(s) 277
LpnPI CCDG 4 cut(s) 26, 78, 147, 285
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 235
MaeI CTAG 2 cut(s) 30, 216
MaeII ACGT 1 cut(s) 37
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 2 cut(s) 67, 113
MluCI AATT 3 cut(s) 59, 128, 151
MnlI CCTC 1 cut(s) 166
MseI TTAA 3 cut(s) 126, 284, 292
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 181
NciI CCSGG 1 cut(s) 66
NdeII GATC 1 cut(s) 277
NlaIII CATG 1 cut(s) 143
PfeI GAWTC 2 cut(s) 113, 165
PkrI GCNGC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 277
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 3 cut(s) 126, 284, 292
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 66
SetI ASST 3 cut(s) 25, 40, 51
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 273
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 3 cut(s) 59, 128, 151
SsiI CCGC 1 cut(s) 147
SspMI CTAG 2 cut(s) 30, 216
StyD4I CCNGG 1 cut(s) 64
TaiI ACGT 1 cut(s) 40
TasI AATT 3 cut(s) 59, 128, 151
TfiI GAWTC 2 cut(s) 113, 165
Tru1I TTAA 3 cut(s) 126, 284, 292
Tru9I TTAA 3 cut(s) 126, 284, 292
TseI GCWGC 1 cut(s) 176
XapI RAATTY 2 cut(s) 59, 128
XspI CTAG 2 cut(s) 30, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.