Rh1BG354700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000655
Physical Location & Seq
Reverse (-)
48628603 .. 48630190
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG354700.1

Sequence Viewer

Length: 342 bp
ATGAACCAAAGCCCAACGAACCCCCGAGTACAGACAGAAGAAACTCCGGGCAAACCCTCCTCGACTAGTTACATGGGTCTTTTCAGTTCCGATTCCTGCTCCGATTCCGGTTCACTTTTCCGTCGCCGTTCCAAAGAATCATCATCCAGTTCCCCCCCAAAACCAAAGAGTCTTAGTGAAGTTCAAGATGAGCTTGTCAAGAAATATCCTCCCGGTGCTGTGGTTATTCTGACTAGAACTCCGTTGAGATCAGCTGATTGTTTCAGGTGGGACTATCACAGGCCGAAATACCGATATCCTACTTGTGAGGAATGGATTGAAAAGTTCTACGAGGTACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.94

Weight (kDa)

8.81

Isoelectric Point (pI)

88.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 334
AfaI GTAC 2 cut(s) 30, 336
AgsI TTSAA 2 cut(s) 185, 320
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 2 cut(s) 193, 254
AluI AGCT 2 cut(s) 193, 254
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 1 cut(s) 281
Asp718I GGTACC 1 cut(s) 334
AsuC2I CCSGG 2 cut(s) 48, 213
AvaI CYCGRG 1 cut(s) 24
BanI GGYRCC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 111
BcnI CCSGG 2 cut(s) 48, 213
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 234
Bme1390I CCNGG 2 cut(s) 48, 213
BmeT110I CYCGRG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 48, 213
BpuMI CCSGG 2 cut(s) 48, 213
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bse1I ACTGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 49
BshFI GGCC 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 3 cut(s) 47, 108, 213
BslFI GGGAC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 24
Bsp143I GATC 1 cut(s) 248
BspANI GGCC 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 334
BsrI ACTGG 1 cut(s) 147
BssMI GATC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 1 cut(s) 251
BstMBI GATC 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 46, 211
BsuRI GGCC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 143
Csp6I GTAC 2 cut(s) 29, 335
CviAII CATG 1 cut(s) 73
CviJI RGCY 4 cut(s) 12, 193, 254, 283
CviKI_1 RGCY 4 cut(s) 12, 193, 254, 283
CviQI GTAC 2 cut(s) 29, 335
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
Eco32I GATATC 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 24
EcoRV GATATC 1 cut(s) 296
FaeI CATG 1 cut(s) 76
FaiI YATR 1 cut(s) 74
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 1 cut(s) 284
FatI CATG 1 cut(s) 72
FokI GGATG 1 cut(s) 130
FspBI CTAG 2 cut(s) 66, 234
HaeIII GGCC 1 cut(s) 283
HapII CCGG 3 cut(s) 47, 108, 213
Hin1II CATG 1 cut(s) 76
HinfI GANTC 4 cut(s) 92, 104, 137, 169
HpaII CCGG 3 cut(s) 47, 108, 213
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 91, 103, 231
Hpy188III TCNNGA 2 cut(s) 185, 199
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 1 cut(s) 76
KpnI GGTACC 1 cut(s) 338
Kzo9I GATC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 7 cut(s) 60, 109, 121, 160, 226, 250, 265
MaeI CTAG 2 cut(s) 66, 234
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 5 cut(s) 67, 70, 219, 301, 325
MseI TTAA 1 cut(s) 340
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 3 cut(s) 47, 108, 213
MspR9I CCNGG 2 cut(s) 48, 213
NciI CCSGG 2 cut(s) 48, 213
NdeII GATC 1 cut(s) 248
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 336
PfeI GAWTC 3 cut(s) 92, 104, 137
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 2 cut(s) 30, 336
RsaNI GTAC 2 cut(s) 29, 335
SaqAI TTAA 1 cut(s) 340
Sau3AI GATC 1 cut(s) 248
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 2 cut(s) 48, 213
SetI ASST 5 cut(s) 195, 256, 269, 336, 340
SpeI ACTAGT 1 cut(s) 65
SspMI CTAG 2 cut(s) 66, 234
StyD4I CCNGG 2 cut(s) 46, 211
TaqI TCGA 1 cut(s) 62
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 3 cut(s) 92, 104, 137
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 110, 231
XspI CTAG 2 cut(s) 66, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.