Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000655

Physical Location & Seq

Genomic Coordinates Reverse (-)

21674666 .. 21675299

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTGGGGGTGCTCGTTGCCGTGTCCGTTCAGGCGGAGGGTTGAGATCGTCCGGAAGAAAATCCACCGGATCAGTAAGTATCAGTGAACATCAAGAGAGCCTTGTGAGGAGATATCCTGGTGCAACTTATATTGTTCTTCGTCCAAGATCAGGATCTGCCGTCAGCGCTTCGCTTCCTGACGATTATCAGTTTGATATGTGCCAGAATATTCTGGATCAGTACTATGATATGAGCCGCTTGTGTGGGAGCGACTTCCCTATGTGTGTAACACGTCGCAGCACTATACTCAAACTTTGTGGTATCGAGGTGCCTGCTGATGATTTAGACAAGAAGGCCTCTACTTCCACCAATGCAGCAGCTCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.29

Weight (kDa)

8.93

Isoelectric Point (pI)

60.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27230 FvH4_2g27250 FvH4_2g27260 FvH4_2g27290 FvH4_2g27290 FvH4_3g22050 FvH4_7g19400 FvH4_7g19420 FvH4_7g26910 FvH4_7g26911 FvH4_7g26911 FvH4_7g27060 FvH4_7g27070
rosa_chinensis	RchiOBHm_Chr1g0373611 RchiOBHm_Chr1g0373961 RchiOBHm_Chr1g0374001 RchiOBHm_Chr1g0374041 RchiOBHm_Chr1g0374051 RchiOBHm_Chr6g0294671 RchiOBHm_Chr6g0294681 RchiOBHm_Chr6g0294701 RchiOBHm_Chr6g0294711 RchiOBHm_Chr6g0294721 RchiOBHm_Chr6g0294741
rosa_laevigata	RLG00000026787 RLG00000026813
rosa_multiflora	Rmu_co8111738.1_g000001 Rmu_sc0000475.1_g000008 Rmu_sc0000475.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283780 Rroxscaffold_4G00283790 Rroxscaffold_4G00284120 Rroxscaffold_7G00173070 Rroxscaffold_7G00173090
rosa_rugosa	Rorug01G0378400 Rorug01G0378400 Rorug01G0378400 Rorug01G0380200 Rorug05G0286100 Rorug06G0246400
rosa_samantha	Rh1AG390600 Rh1BG352200 Rh1BG354700 Rh1CG365000 Rh1CG367800 Rh1DG037500 Rh1DG382700 Rh1DG385400 Rh5BG368200 Rh5CG391500 Rh5DG382400 Rh6AG359000 Rh6AG359400 Rh6AG359500 Rh6AG359800 Rh6AG359900 Rh6AG360100 Rh6BG366300 Rh6BG366500 Rh6BG366600 Rh6CG373000 Rh6CG373200 Rh6CG373300 Rh6CG373400 Rh6CG373500 Rh6CG373700 Rh6DG359900 Rh6DG360100
rosa_wichuraiana	Rw1G034460 Rw1G034740 Rw5G033500 Rw5G033670 Rw6G031330 Rw6G031340 Rw6G031360 Rw6G031370 Rw6G031420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	2 cut(s)	36, 238
AclWI	GGATC	3 cut(s)	79, 163, 225
AfaI	GTAC	1 cut(s)	224
AfeI	AGCGCT	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw21I	GWGCWC	1 cut(s)	16
AlwI	GGATC	3 cut(s)	79, 163, 225
AlwNI	CAGNNNCTG	1 cut(s)	158
Aor13HI	TCCGGA	1 cut(s)	53
Aor51HI	AGCGCT	1 cut(s)	169
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	3 cut(s)	279, 356, 359
AspLEI	GCGC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	291, 368
BceAI	ACGGC	2 cut(s)	6, 146
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	4 cut(s)	238, 280, 357, 360
BlsI	GCNGC	4 cut(s)	239, 281, 358, 361
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	154
BsaWI	WCCGGW	2 cut(s)	53, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	154
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	120
BseJI	GATNNNNATC	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	291, 368
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	54, 69
BslI	CCNNNNNNNGG	1 cut(s)	152
BsnI	GGCC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	5 cut(s)	47, 71, 149, 155, 217
BspACI	CCGC	2 cut(s)	36, 238
BspANI	GGCC	1 cut(s)	338
BspEI	TCCGGA	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	3 cut(s)	79, 163, 225
BspT107I	GGYRCC	1 cut(s)	310
BssMI	GATC	5 cut(s)	47, 71, 149, 155, 217
Bst2UI	CCWGG	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	315
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	5 cut(s)	50, 74, 152, 158, 220
BstMBI	GATC	5 cut(s)	47, 71, 149, 155, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 167
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	291, 368
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	338
BtrI	CACGTC	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	315
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviJI	RGCY	5 cut(s)	5, 102, 237, 338, 362
CviKI_1	RGCY	5 cut(s)	5, 102, 237, 338, 362
CviQI	GTAC	1 cut(s)	223
DpnI	GATC	5 cut(s)	49, 73, 151, 157, 219
DpnII	GATC	5 cut(s)	47, 71, 149, 155, 217
EciI	GGCGGA	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	338
Eco32I	GATATC	1 cut(s)	116
Eco47III	AGCGCT	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	116
FaiI	YATR	6 cut(s)	132, 200, 228, 233, 263, 287
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
Fnu4HI	GCNGC	4 cut(s)	238, 280, 357, 360
Fsp4HI	GCNGC	4 cut(s)	238, 280, 357, 360
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	4 cut(s)	238, 280, 357, 360
GsaI	CCCAGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	2 cut(s)	54, 69
HhaI	GCGC	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HpaII	CCGG	2 cut(s)	54, 69
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188III	TCNNGA	5 cut(s)	54, 95, 153, 179, 215
Hpy8I	GTNNAC	1 cut(s)	89
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	125, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 167
HpySE526I	ACGT	1 cut(s)	274
HspAI	GCGC	1 cut(s)	168
Kpn2I	TCCGGA	1 cut(s)	53
Kzo9I	GATC	5 cut(s)	47, 71, 149, 155, 217
LmnI	GCTCC	1 cut(s)	249
Lsp1109I	GCAGC	2 cut(s)	291, 368
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	5 cut(s)	49, 73, 151, 157, 219
MboI	GATC	5 cut(s)	47, 71, 149, 155, 217
MboII	GAAGA	2 cut(s)	69, 131
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	16
MnlI	CCTC	4 cut(s)	32, 102, 301, 349
MroI	TCCGGA	1 cut(s)	53
MspI	CCGG	2 cut(s)	54, 69
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	11, 167
NdeII	GATC	5 cut(s)	47, 71, 149, 155, 217
NlaIV	GGNNCC	1 cut(s)	312
PceI	AGGCCT	1 cut(s)	338
PkrI	GCNGC	4 cut(s)	239, 281, 358, 361
Psp6I	CCWGG	1 cut(s)	118
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SatI	GCNGC	4 cut(s)	238, 280, 357, 360
Sau3AI	GATC	5 cut(s)	47, 71, 149, 155, 217
ScaI	AGTACT	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	3 cut(s)	277, 312, 364
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	2 cut(s)	36, 238
SspI	AATATT	1 cut(s)	211
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	118
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	306
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	240
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	3 cut(s)	279, 356, 359
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	91
ZrmI	AGTACT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.