Rw5G033500

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
57025839 .. 57028110
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033500.1

Sequence Viewer

Length: 354 bp
ATGGGAAGACCAAACGGAAAATCCTGGTTCTCCATATTCACTGATTTATTTTTCGGAAAACCAAAACCAAAAGTGAAGAGTACTCCTAGTCAACGTCAGGATGAGCTTGTGAAGAAATTCCCTGGGTCAAAAATTATTCGCCGTCCAAATCCAATGGAAGAAGCCGATGATTCACCTTACATTAAGTTTCCAAACCATAATTGCGAGAATTATATGAGAAGACTATATGAGGCAGTGAGAATTTACGGGAAGGATTATTGTGAGATGGATTACAATAGTCGCGTATATCAACGAATAGTACGCCAGGACTGTGGTATTGAAATTCACCCTGCAGATGAGTTAAAGAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.9

Weight (kDa)

8.97

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 282
AcsI RAATTY 3 cut(s) 116, 240, 321
AfaI GTAC 2 cut(s) 82, 300
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 3 cut(s) 23, 121, 303
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
ApoI RAATTY 3 cut(s) 116, 240, 321
Asp700I GAANNNNTTC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 165, 317
BbsI GAAGAC 2 cut(s) 13, 226
BccI CCATC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 3 cut(s) 25, 123, 305
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 330
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 25, 123, 305
BmrFI CCNGG 3 cut(s) 25, 123, 305
BpiI GAAGAC 2 cut(s) 13, 226
BsaJI CCNNGG 2 cut(s) 121, 122
BseBI CCWGG 3 cut(s) 25, 123, 305
BseDI CCNNGG 2 cut(s) 121, 122
BseGI GGATG 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 282
BspFNI CGCG 1 cut(s) 282
BspMAI CTGCAG 1 cut(s) 334
BssECI CCNNGG 2 cut(s) 121, 122
Bst2UI CCWGG 3 cut(s) 25, 123, 305
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 1 cut(s) 71
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 282
BstNI CCWGG 3 cut(s) 25, 123, 305
BstSCI CCNGG 3 cut(s) 23, 121, 303
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 1 cut(s) 282
BstV2I GAAGAC 2 cut(s) 13, 226
BstXI CCANNNNNNTGG 1 cut(s) 311
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 39, 240
Csp6I GTAC 2 cut(s) 81, 299
CviJI RGCY 2 cut(s) 106, 164
CviKI_1 RGCY 2 cut(s) 106, 164
CviQI GTAC 2 cut(s) 81, 299
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EcoRII CCWGG 3 cut(s) 23, 121, 303
FaiI YATR 7 cut(s) 35, 198, 213, 215, 226, 228, 286
FokI GGATG 1 cut(s) 113
FspBI CTAG 1 cut(s) 87
HincII GTYRAC 1 cut(s) 92
HindII GTYRAC 1 cut(s) 92
HinfI GANTC 1 cut(s) 170
HphI GGTGA 2 cut(s) 165, 317
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 94
LpnPI CCDG 8 cut(s) 10, 37, 83, 108, 135, 290, 317, 342
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 94
MboII GAAGA 5 cut(s) 18, 88, 124, 170, 231
MluCI AATT 6 cut(s) 116, 132, 199, 208, 240, 321
MnlI CCTC 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 2 cut(s) 183, 341
MspR9I CCNGG 3 cut(s) 25, 123, 305
MvaI CCWGG 3 cut(s) 25, 123, 305
MvnI CGCG 1 cut(s) 282
PasI CCCWGGG 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 170
Psp6I CCWGG 3 cut(s) 23, 121, 303
PspGI CCWGG 3 cut(s) 23, 121, 303
PstI CTGCAG 1 cut(s) 334
RsaI GTAC 2 cut(s) 82, 300
RsaNI GTAC 2 cut(s) 81, 299
SaqAI TTAA 2 cut(s) 183, 341
ScaI AGTACT 1 cut(s) 82
ScrFI CCNGG 3 cut(s) 25, 123, 305
SetI ASST 3 cut(s) 97, 108, 178
SfcI CTRYAG 1 cut(s) 330
Sse9I AATT 6 cut(s) 116, 132, 199, 208, 240, 321
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 23, 121, 303
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 1 cut(s) 97
TasI AATT 6 cut(s) 116, 132, 199, 208, 240, 321
TatI WGTACW 1 cut(s) 80
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 183, 341
Tru9I TTAA 2 cut(s) 183, 341
TscAI CASTG 2 cut(s) 46, 240
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 46, 240
XapI RAATTY 3 cut(s) 116, 240, 321
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 1 cut(s) 87
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.