Rroxscaffold_4G00283780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000655
Physical Location & Seq
Reverse (-)
5626922 .. 5628125
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283780.1

Sequence Viewer

Length: 381 bp
ATGGGTCGGGGTCATGCTCGTGGTCGCCGTTCACGTTCACGTTCACGTTCACGTTCAGGAGGAGGTCCTAGATTGAGTCCTTGCCAGCAACAAGAGGATCTTGTCCAGGGTTATCCTGGCGCTACTGCTATCGTTGCTCGTCCAAATTCACATGGGTCACACGGATCTGGGTCTGGGCGTGGCTCTCTTGGTGATAAGTATCCGTATGAGGACTGCCAAAGATTTCTCGATTACCTTTATGATGCAACACGTTTGTGTGGGAGCGATTGTACCAGTGCTGTAGCAACTCGCAGTTACGTAGAGCTCTTTTGTGGTATTAAGGTGTTACCTGATGAGTTAGAGAAGAAGGCCACTGATGCAGCAGCTGCAGATCATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.59

Weight (kDa)

9.12

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 105, 172
AcsI RAATTY 1 cut(s) 145
AfaI GTAC 1 cut(s) 271
AflIII ACRYGT 1 cut(s) 248
AjnI CCWGG 2 cut(s) 105, 115
AleI CACNNNNGTG 1 cut(s) 253
AluBI AGCT 2 cut(s) 304, 365
AluI AGCT 2 cut(s) 304, 365
Alw21I GWGCWC 1 cut(s) 306
AlwI GGATC 2 cut(s) 105, 172
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 359, 362, 365
ApoI RAATTY 1 cut(s) 145
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 306
BauI CACGAG 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 3 cut(s) 352, 371, 374
BceAI ACGGC 1 cut(s) 12
BciT130I CCWGG 2 cut(s) 107, 117
BciVI GTATCC 1 cut(s) 210
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 2 cut(s) 279, 366
BfoI RGCGCY 1 cut(s) 123
BfuI GTATCC 1 cut(s) 210
BisI GCNGC 3 cut(s) 360, 363, 366
BlsI GCNGC 3 cut(s) 361, 364, 367
Bme1390I CCNGG 2 cut(s) 107, 117
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmrFI CCNGG 2 cut(s) 107, 117
BmsI GCATC 2 cut(s) 232, 346
BsaAI YACGTR 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bse1I ACTGG 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 2 cut(s) 107, 117
BseDI CCNNGG 1 cut(s) 106
BseJI GATNNNNATC 1 cut(s) 198
BseNI ACTGG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 352, 371, 374
BshFI GGCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 306
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 3 cut(s) 97, 164, 370
BspANI GGCC 1 cut(s) 350
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 2 cut(s) 105, 172
BsrI ACTGG 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 3 cut(s) 97, 164, 370
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 107, 117
BstAPI GCANNNNNTGC 1 cut(s) 365
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 3 cut(s) 100, 167, 373
BstMBI GATC 3 cut(s) 97, 164, 370
BstMWI GCNNNNNNNGC 3 cut(s) 134, 356, 365
BstNI CCWGG 2 cut(s) 107, 117
BstSCI CCNGG 2 cut(s) 105, 115
BstSFI CTRYAG 2 cut(s) 279, 366
BstSNI TACGTA 1 cut(s) 298
BstV1I GCAGC 3 cut(s) 352, 371, 374
BstX2I RGATCY 2 cut(s) 97, 164
BstYI RGATCY 2 cut(s) 97, 164
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 280, 351
Cac8I GCNNGC 1 cut(s) 86
CaiI CAGNNNCTG 1 cut(s) 365
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 270
CviAII CATG 2 cut(s) 14, 152
CviJI RGCY 4 cut(s) 183, 304, 350, 365
CviKI_1 RGCY 4 cut(s) 183, 304, 350, 365
CviQI GTAC 1 cut(s) 270
DpnI GATC 3 cut(s) 99, 166, 372
DpnII GATC 3 cut(s) 97, 164, 370
Ecl136II GAGCTC 1 cut(s) 304
Eco105I TACGTA 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 65
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 105, 115
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 2 cut(s) 17, 155
FaiI YATR 4 cut(s) 15, 153, 207, 240
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 2 cut(s) 13, 151
Fnu4HI GCNGC 3 cut(s) 360, 363, 366
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 3 cut(s) 360, 363, 366
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 121
GluI GCNGC 3 cut(s) 360, 363, 366
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 1 cut(s) 350
HhaI GCGC 1 cut(s) 122
Hin1II CATG 2 cut(s) 17, 155
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 1 cut(s) 76
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 4 cut(s) 32, 38, 44, 50
Hpy188III TCNNGA 2 cut(s) 57, 227
Hpy8I GTNNAC 4 cut(s) 32, 38, 44, 50
HpyAV CCTTC 1 cut(s) 340
HpyCH4IV ACGT 6 cut(s) 34, 40, 46, 52, 250, 297
HpyCH4V TGCA 3 cut(s) 245, 359, 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 356, 365
HpySE526I ACGT 6 cut(s) 34, 40, 46, 52, 250, 297
Hsp92II CATG 2 cut(s) 17, 155
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 3 cut(s) 97, 164, 370
LmnI GCTCC 1 cut(s) 261
Lsp1109I GCAGC 3 cut(s) 352, 371, 374
LweI GCATC 2 cut(s) 232, 346
MaeI CTAG 1 cut(s) 69
MaeII ACGT 6 cut(s) 34, 40, 46, 52, 250, 297
MaeIII GTNAC 3 cut(s) 156, 293, 324
MalI GATC 3 cut(s) 99, 166, 372
MboI GATC 3 cut(s) 97, 164, 370
MboII GAAGA 1 cut(s) 355
MflI RGATCY 2 cut(s) 97, 164
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 1 cut(s) 145
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 4 cut(s) 53, 56, 88, 202
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 18, 253
MspA1I CMGCKG 1 cut(s) 365
MspR9I CCNGG 2 cut(s) 107, 117
MvaI CCWGG 2 cut(s) 107, 117
MwoI GCNNNNNNNGC 3 cut(s) 134, 356, 365
NdeII GATC 3 cut(s) 97, 164, 370
NlaIII CATG 2 cut(s) 17, 155
NmuCI GTSAC 1 cut(s) 156
OliI CACNNNNGTG 1 cut(s) 253
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 31
PkrI GCNGC 3 cut(s) 361, 364, 367
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
Ppu21I YACGTR 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 105, 115
PspGI CCWGG 2 cut(s) 105, 115
PspPI GGNCC 1 cut(s) 65
PspPPI RGGWCCY 1 cut(s) 65
PstI CTGCAG 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 2 cut(s) 97, 164
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 2 cut(s) 18, 253
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 3 cut(s) 360, 363, 366
Sau3AI GATC 3 cut(s) 97, 164, 370
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 107, 117
SduI GDGCHC 1 cut(s) 306
SfaNI GCATC 2 cut(s) 232, 346
SfcI CTRYAG 2 cut(s) 279, 366
SinI GGWCC 1 cut(s) 65
SmiMI CAYNNNNRTG 2 cut(s) 18, 253
SnaBI TACGTA 1 cut(s) 298
Sse9I AATT 1 cut(s) 145
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 105, 115
TaiI ACGT 6 cut(s) 37, 43, 49, 55, 253, 300
TaqI TCGA 1 cut(s) 228
TasI AATT 1 cut(s) 145
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 280, 358
TseFI GTSAC 1 cut(s) 156
TseI GCWGC 3 cut(s) 359, 362, 365
Tsp45I GTSAC 1 cut(s) 156
TspGWI ACGGA 2 cut(s) 177, 192
TspRI CASTG 2 cut(s) 280, 358
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.