Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000655

Physical Location & Seq

Genomic Coordinates Reverse (-)

55351047 .. 55351939

Gene Structure 893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G031360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCTCCCCAGAATTCAGAGACACCGTTAACTCGAGCTCAACGCCAAGATGAGCTTCTGAACATGTTTCCTGGCACTGCTAAGGTTATTCTTCGTCCAAGAACAAATCCAGATGGCTCTGAAATTGTTACCGTAACTGATTATGAGTTTCCTGATCTTAGATGTAAGCTCTGGTTGAAGAATCTCTATCAGGCAATGCGTTTATGTGGGAGGGATCATGGAAATTTCGTAGCTGATTTCCAAGGAGGGTTAAAGACATTCTGTGGCATTGAAGTGGACCTTGATGCGATGGAGAAGCCAATAGGGAATGGTTTTGCTACATCTCCCAGTTCGGTTCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.73

Weight (kDa)

5.6

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27230 FvH4_2g27250 FvH4_2g27260 FvH4_2g27290 FvH4_2g27290 FvH4_3g22050 FvH4_7g19400 FvH4_7g19420 FvH4_7g26910 FvH4_7g26911 FvH4_7g26911 FvH4_7g27060 FvH4_7g27070
rosa_chinensis	RchiOBHm_Chr1g0373611 RchiOBHm_Chr1g0373961 RchiOBHm_Chr1g0374001 RchiOBHm_Chr1g0374041 RchiOBHm_Chr1g0374051 RchiOBHm_Chr6g0294671 RchiOBHm_Chr6g0294681 RchiOBHm_Chr6g0294701 RchiOBHm_Chr6g0294711 RchiOBHm_Chr6g0294721 RchiOBHm_Chr6g0294741
rosa_laevigata	RLG00000026787 RLG00000026813
rosa_multiflora	Rmu_co8111738.1_g000001 Rmu_sc0000475.1_g000008 Rmu_sc0000475.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283780 Rroxscaffold_4G00283790 Rroxscaffold_4G00284120 Rroxscaffold_7G00173070 Rroxscaffold_7G00173090
rosa_rugosa	Rorug01G0378400 Rorug01G0378400 Rorug01G0378400 Rorug01G0380200 Rorug05G0286100 Rorug06G0246400
rosa_samantha	Rh1AG390600 Rh1BG352200 Rh1BG354700 Rh1CG365000 Rh1CG367800 Rh1DG037500 Rh1DG382700 Rh1DG385400 Rh5BG368200 Rh5CG391500 Rh5DG382400 Rh6AG359000 Rh6AG359400 Rh6AG359500 Rh6AG359800 Rh6AG359900 Rh6AG360100 Rh6BG366300 Rh6BG366500 Rh6BG366600 Rh6CG373000 Rh6CG373200 Rh6CG373300 Rh6CG373400 Rh6CG373500 Rh6CG373700 Rh6DG359900 Rh6DG360100
rosa_wichuraiana	Rw1G034460 Rw1G034740 Rw5G033500 Rw5G033670 Rw6G031330 Rw6G031340 Rw6G031360 Rw6G031370 Rw6G031420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	13, 223
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	178, 272
AjnI	CCWGG	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AluBI	AGCT	4 cut(s)	38, 55, 169, 233
AluI	AGCT	4 cut(s)	38, 55, 169, 233
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	222
Ama87I	CYCGRG	1 cut(s)	33
ApoI	RAATTY	2 cut(s)	13, 223
AspS9I	GGNCC	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	40
BccI	CCATC	2 cut(s)	107, 283
BciT130I	CCWGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	72
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	154, 214
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	2 cut(s)	154, 214
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	27, 133
BstDEI	CTNAG	2 cut(s)	81, 158
BstKTI	GATC	2 cut(s)	157, 217
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	154, 214
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	302
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	2 cut(s)	64, 218
CviJI	RGCY	7 cut(s)	5, 38, 55, 117, 169, 233, 298
CviKI_1	RGCY	7 cut(s)	5, 38, 55, 117, 169, 233, 298
DdeI	CTNAG	2 cut(s)	81, 158
DpnI	GATC	2 cut(s)	156, 216
DpnII	GATC	2 cut(s)	154, 214
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	67, 221
FaiI	YATR	4 cut(s)	65, 144, 205, 219
FalI	AAGNNNNNCTT	4 cut(s)	39, 71, 264, 296
FatI	CATG	2 cut(s)	63, 217
FriOI	GRGCYC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	67, 221
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	181
HpaI	GTTAAC	1 cut(s)	30
Hpy166II	GTNNAC	2 cut(s)	30, 277
Hpy188I	TCNGA	3 cut(s)	19, 60, 121
Hpy188III	TCNNGA	2 cut(s)	110, 152
Hpy8I	GTNNAC	2 cut(s)	30, 277
HpyCH4III	ACNGT	2 cut(s)	27, 133
HpyF3I	CTNAG	2 cut(s)	81, 158
Hsp92II	CATG	2 cut(s)	67, 221
KspAI	GTTAAC	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	154, 214
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	8 cut(s)	23, 57, 84, 123, 157, 165, 176, 340
LweI	GCATC	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	127, 133
MalI	GATC	2 cut(s)	156, 216
MboI	GATC	2 cut(s)	154, 214
MboII	GAAGA	2 cut(s)	83, 190
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	3 cut(s)	13, 123, 223
MnlI	CCTC	2 cut(s)	204, 239
MseI	TTAA	2 cut(s)	29, 251
MslI	CAYNNNNRTG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	154, 214
NlaIII	CATG	2 cut(s)	67, 221
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	67
PaeR7I	CTCGAG	1 cut(s)	33
PciI	ACATGT	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	181
PscI	ACATGT	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	277
PspXI	VCTCGAGB	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	29, 251
Sau3AI	GATC	2 cut(s)	154, 214
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	6 cut(s)	40, 57, 87, 171, 235, 282
SfaNI	GCATC	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	3 cut(s)	13, 123, 223
SstI	GAGCTC	1 cut(s)	40
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	27, 133
TaqI	TCGA	1 cut(s)	34
TasI	AATT	3 cut(s)	13, 123, 223
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	29, 251
Tru9I	TTAA	2 cut(s)	29, 251
TscAI	CASTG	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	2 cut(s)	13, 223
XceI	RCATGY	1 cut(s)	67
XhoI	CTCGAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.