Rh6AG359400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000655
Physical Location & Seq
Forward (+)
55780663 .. 55782433
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG359400.1

Sequence Viewer

Length: 288 bp
ATGGCTGGTGGTGCCCGTTGCGGTGTCCGTTCAGGCGGAGGGTTGAGATCGTCCGGAAGAATTGGAGGAAAATCCACCGGCCTAAGATCAGGTTCCAGATTAAGTACCAGGGAACAACAAGATGACCTTCTGAGGAGATATCCTGGTGCAGCTTATATTGTTACTCGTCGAAGATCAGAACCTGCCGCTGGCGCTGGCGCTGTGGCTTCAGACGAAATGATTTCGTTTGATACCTGCCGGAGTCTTTTGTATCACTACTATGATGTACGCGTATTTTACCTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.28

Weight (kDa)

10.12

Isoelectric Point (pI)

86.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 190, 242
AccB1I GGYRCC 1 cut(s) 11
AccII CGCG 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 3 cut(s) 21, 36, 186
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 2 cut(s) 106, 267
AfiI CCNNNNNNNGG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 268
AjnI CCWGG 2 cut(s) 107, 142
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
AlwNI CAGNNNCTG 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 53
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 149
AspLEI GCGC 2 cut(s) 194, 200
BaeGI GKGCMC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 161
BciT130I CCWGG 2 cut(s) 109, 144
BfoI RGCGCY 2 cut(s) 195, 201
BfuAI ACCTGC 2 cut(s) 190, 242
BisI GCNGC 2 cut(s) 150, 186
BlsI GCNGC 2 cut(s) 151, 187
Bme1390I CCNGG 2 cut(s) 109, 144
BmiI GGNNCC 2 cut(s) 13, 94
BmrFI CCNGG 2 cut(s) 109, 144
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 77
BseAI TCCGGA 1 cut(s) 53
BseBI CCWGG 2 cut(s) 109, 144
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 1 cut(s) 161
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 11
BsiSI CCGG 3 cut(s) 54, 78, 238
BslI CCNNNNNNNGG 1 cut(s) 188
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 16
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 3 cut(s) 47, 86, 173
BspACI CCGC 3 cut(s) 21, 36, 186
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 123
BspEI TCCGGA 1 cut(s) 53
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 13, 94
BspMI ACCTGC 2 cut(s) 190, 242
BspT107I GGYRCC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 3 cut(s) 47, 86, 173
Bst2UI CCWGG 2 cut(s) 109, 144
BstC8I GCNNGC 2 cut(s) 190, 196
BstDEI CTNAG 2 cut(s) 83, 131
BstFNI CGCG 1 cut(s) 270
BstH2I RGCGCY 2 cut(s) 195, 201
BstHHI GCGC 2 cut(s) 194, 200
BstKTI GATC 3 cut(s) 50, 89, 176
BstMBI GATC 3 cut(s) 47, 86, 173
BstMWI GCNNNNNNNGC 2 cut(s) 11, 191
BstNI CCWGG 2 cut(s) 109, 144
BstSCI CCNGG 2 cut(s) 107, 142
BstSLI GKGCMC 1 cut(s) 16
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 81
BveI ACCTGC 2 cut(s) 190, 242
Cac8I GCNNGC 2 cut(s) 190, 196
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 2 cut(s) 194, 200
Cfr10I RCCGGY 1 cut(s) 77
Csp6I GTAC 2 cut(s) 105, 266
CviJI RGCY 4 cut(s) 5, 81, 152, 206
CviKI_1 RGCY 4 cut(s) 5, 81, 152, 206
CviQI GTAC 2 cut(s) 105, 266
DdeI CTNAG 2 cut(s) 83, 131
DpnI GATC 3 cut(s) 49, 88, 175
DpnII GATC 3 cut(s) 47, 86, 173
EciI GGCGGA 1 cut(s) 51
Eco32I GATATC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 107, 142
EcoRV GATATC 1 cut(s) 140
FaiI YATR 3 cut(s) 156, 261, 286
FalI AAGNNNNNCTT 2 cut(s) 111, 143
Fnu4HI GCNGC 2 cut(s) 150, 186
Fsp4HI GCNGC 2 cut(s) 150, 186
GlaI GCGC 2 cut(s) 193, 199
GluI GCNGC 2 cut(s) 150, 186
HaeII RGCGCY 2 cut(s) 195, 201
HaeIII GGCC 1 cut(s) 81
HapII CCGG 3 cut(s) 54, 78, 238
HhaI GCGC 2 cut(s) 194, 200
Hin6I GCGC 2 cut(s) 192, 198
HinP1I GCGC 2 cut(s) 192, 198
HinfI GANTC 1 cut(s) 241
HpaII CCGG 3 cut(s) 54, 78, 238
Hpy188I TCNGA 3 cut(s) 132, 178, 211
Hpy188III TCNNGA 2 cut(s) 54, 96
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 191
HpyF3I CTNAG 2 cut(s) 83, 131
HspAI GCGC 2 cut(s) 192, 198
Kpn2I TCCGGA 1 cut(s) 53
Kzo9I GATC 3 cut(s) 47, 86, 173
Lsp1109I GCAGC 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 49, 88, 175
MboI GATC 3 cut(s) 47, 86, 173
MboII GAAGA 2 cut(s) 69, 183
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 1 cut(s) 60
MluI ACGCGT 1 cut(s) 268
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 3 cut(s) 32, 59, 126
MroI TCCGGA 1 cut(s) 53
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 3 cut(s) 54, 78, 238
MspR9I CCNGG 2 cut(s) 109, 144
MvaI CCWGG 2 cut(s) 109, 144
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 11, 191
NdeII GATC 3 cut(s) 47, 86, 173
NlaIV GGNNCC 2 cut(s) 13, 94
PkrI GCNGC 2 cut(s) 151, 187
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 107, 142
PspGI CCWGG 2 cut(s) 107, 142
PspN4I GGNNCC 2 cut(s) 13, 94
PstNI CAGNNNCTG 1 cut(s) 182
RsaI GTAC 2 cut(s) 106, 267
RsaNI GTAC 2 cut(s) 105, 266
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 2 cut(s) 150, 186
Sau3AI GATC 3 cut(s) 47, 86, 173
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 2 cut(s) 109, 144
SduI GDGCHC 1 cut(s) 16
SetI ASST 6 cut(s) 94, 129, 154, 184, 236, 282
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 1 cut(s) 60
SsiI CCGC 3 cut(s) 21, 36, 186
StyD4I CCNGG 2 cut(s) 107, 142
TaqI TCGA 1 cut(s) 169
TasI AATT 1 cut(s) 60
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseI GCWGC 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.