RLG00000026787

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
6050579 .. 6051647
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026787

Sequence Viewer

Length: 333 bp
ATGGGTCTTTTCAGCTCCGATTCCTGCTCCGATTCCGGTTCACTTTTCCGTCGCCGTTCCAAAGGTCTGAGTGAAGTTCAAGATGAGCTTGTCAAGAAATATCCTCCCGGTGCTGTGGTTATTCTGACTAGAACTCCGTCGAGATCAGCTGATGATTTCAGGTGGGACTATCTCAGGCCGAAATACCGATATCCTACTTGTGAGGAATGGATTGAAAAGTTCTACGAGTACCAACGCTCGTGTGGAAGAAATTGTCCCGTATGGTCCAAGATACAGATTGAGACCTGTGGTCTCGAGGTGTACCCCGAAAAGCTATTGAATGACTCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.86

Weight (kDa)

7.56

Isoelectric Point (pI)

77.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 230, 302
AgsI TTSAA 3 cut(s) 80, 215, 319
AhdI GACNNNNNGTC 1 cut(s) 288
AluBI AGCT 4 cut(s) 15, 88, 149, 313
AluI AGCT 4 cut(s) 15, 88, 149, 313
Alw26I GTCTC 2 cut(s) 275, 296
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 108
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 264
BauI CACGAG 1 cut(s) 238
BceAI ACGGC 1 cut(s) 39
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 275, 296
BfaI CTAG 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 264
BmeRI GACNNNNNGTC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 108
BsaI GGTCTC 2 cut(s) 275, 296
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
BseMII CTCAG 2 cut(s) 59, 187
BshFI GGCC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 2 cut(s) 36, 108
BslFI GGGAC 2 cut(s) 179, 240
BsmAI GTCTC 2 cut(s) 275, 296
BsmFI GGGAC 2 cut(s) 179, 240
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 2 cut(s) 275, 296
BsoBI CYCGRG 1 cut(s) 293
Bsp143I GATC 1 cut(s) 143
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 2 cut(s) 60, 186
BspTNI GGTCTC 2 cut(s) 275, 296
BssMI GATC 1 cut(s) 143
BssSI CACGAG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 68, 173
BstKTI GATC 1 cut(s) 146
BstMAI GTCTC 2 cut(s) 275, 296
BstMBI GATC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 106
BsuRI GGCC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 229, 301
CviJI RGCY 5 cut(s) 15, 88, 149, 178, 313
CviKI_1 RGCY 5 cut(s) 15, 88, 149, 178, 313
CviQI GTAC 2 cut(s) 229, 301
DdeI CTNAG 2 cut(s) 68, 173
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
DriI GACNNNNNGTC 1 cut(s) 288
Eam1105I GACNNNNNGTC 1 cut(s) 288
Eco31I GGTCTC 2 cut(s) 275, 296
Eco32I GATATC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 293
EcoRV GATATC 1 cut(s) 191
FaiI YATR 1 cut(s) 262
FalI AAGNNNNNCTT 2 cut(s) 72, 104
FaqI GGGAC 2 cut(s) 179, 240
FspBI CTAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 178
HapII CCGG 2 cut(s) 36, 108
HinfI GANTC 3 cut(s) 20, 32, 323
HpaII CCGG 2 cut(s) 36, 108
Hpy166II GTNNAC 2 cut(s) 41, 301
Hpy188I TCNGA 4 cut(s) 19, 31, 69, 126
Hpy188III TCNNGA 4 cut(s) 80, 94, 141, 293
Hpy8I GTNNAC 2 cut(s) 41, 301
Hpy99I CGWCG 2 cut(s) 54, 142
HpyF3I CTNAG 2 cut(s) 68, 173
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 20, 32
LpnPI CCDG 6 cut(s) 37, 49, 121, 145, 160, 298
MaeI CTAG 1 cut(s) 129
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MboII GAAGA 1 cut(s) 258
MluCI AATT 1 cut(s) 250
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 3 cut(s) 114, 196, 289
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 2 cut(s) 36, 108
MspR9I CCNGG 1 cut(s) 108
NciI CCSGG 1 cut(s) 108
NdeII GATC 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 293
PfeI GAWTC 2 cut(s) 20, 32
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 264
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 230, 302
RsaNI GTAC 2 cut(s) 229, 301
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 108
SetI ASST 8 cut(s) 17, 67, 90, 151, 164, 287, 300, 315
Sfr274I CTCGAG 1 cut(s) 293
SinI GGWCC 1 cut(s) 264
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 250
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 106
TaqI TCGA 3 cut(s) 140, 294, 326
TasI AATT 1 cut(s) 250
TfiI GAWTC 2 cut(s) 20, 32
TspGWI ACGGA 2 cut(s) 38, 126
VpaK11BI GGWCC 1 cut(s) 264
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 293
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.