Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000655

Physical Location & Seq

Genomic Coordinates Forward (+)

55740321 .. 55744173

Gene Structure 3853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG360100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCATTGCCGAATCCGGGTCGGGTTGAGAGGATTTGATGTCATCAAAGATGCAGAGACACAACTGGAGGCCTTGTGTCCTGGACTTGTTTCATGTGCTGATATACTTGCATTGGCCGCTCGTGATTCTGTTGACTTGGGACTCGGCAGCCGGGGTACTGCTCATGAGGATGTCCAAGGAGATTTGGGAAGAGATAGCCAATGTGAAAAGGAAGAAATGAGGGTGTTGAAACCAACCATGAAAGAATCAGCACTCCTCTACTCAGAAACAGCTGATGTACCCACTGCTGATATCGGACACCCGTGGATGGACAAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

106

Amino Acids

11.58

Weight (kDa)

4.94

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	8 - 73	3.8e-12	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27230 FvH4_2g27250 FvH4_2g27260 FvH4_2g27290 FvH4_2g27290 FvH4_3g22050 FvH4_7g19400 FvH4_7g19420 FvH4_7g26910 FvH4_7g26911 FvH4_7g26911 FvH4_7g27060 FvH4_7g27070
rosa_chinensis	RchiOBHm_Chr1g0373611 RchiOBHm_Chr1g0373961 RchiOBHm_Chr1g0374001 RchiOBHm_Chr1g0374041 RchiOBHm_Chr1g0374051 RchiOBHm_Chr6g0294671 RchiOBHm_Chr6g0294681 RchiOBHm_Chr6g0294701 RchiOBHm_Chr6g0294711 RchiOBHm_Chr6g0294721 RchiOBHm_Chr6g0294741
rosa_laevigata	RLG00000026787 RLG00000026813
rosa_multiflora	Rmu_co8111738.1_g000001 Rmu_sc0000475.1_g000008 Rmu_sc0000475.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283780 Rroxscaffold_4G00283790 Rroxscaffold_4G00284120 Rroxscaffold_7G00173070 Rroxscaffold_7G00173090
rosa_rugosa	Rorug01G0378400 Rorug01G0378400 Rorug01G0378400 Rorug01G0380200 Rorug05G0286100 Rorug06G0246400
rosa_samantha	Rh1AG390600 Rh1BG352200 Rh1BG354700 Rh1CG365000 Rh1CG367800 Rh1DG037500 Rh1DG382700 Rh1DG385400 Rh5BG368200 Rh5CG391500 Rh5DG382400 Rh6AG359000 Rh6AG359400 Rh6AG359500 Rh6AG359800 Rh6AG359900 Rh6AG360100 Rh6BG366300 Rh6BG366500 Rh6BG366600 Rh6CG373000 Rh6CG373200 Rh6CG373300 Rh6CG373400 Rh6CG373500 Rh6CG373700 Rh6DG359900 Rh6DG360100
rosa_wichuraiana	Rw1G034460 Rw1G034740 Rw5G033500 Rw5G033670 Rw6G031330 Rw6G031340 Rw6G031360 Rw6G031370 Rw6G031420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	119
AciI	CCGC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	114
AfaI	GTAC	2 cut(s)	157, 279
AfiI	CCNNNNNNNGG	2 cut(s)	16, 307
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	50
AoxI	GGCC	2 cut(s)	69, 114
ApeKI	GCWGC	1 cut(s)	147
AsuC2I	CCSGG	2 cut(s)	17, 152
BauI	CACGAG	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	81
BcnI	CCSGG	2 cut(s)	17, 152
BcoDI	GTCTC	1 cut(s)	50
BisI	GCNGC	2 cut(s)	117, 148
BlsI	GCNGC	2 cut(s)	118, 149
Bme1390I	CCNGG	3 cut(s)	17, 81, 152
BmrFI	CCNGG	3 cut(s)	17, 81, 152
BmsI	GCATC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	17, 152
BsaJI	CCNNGG	3 cut(s)	151, 175, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 307
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	4
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	3 cut(s)	151, 175, 302
BseGI	GGATG	2 cut(s)	175, 312
BseLI	CCNNNNNNNGG	2 cut(s)	16, 307
BseMI	GCAATG	1 cut(s)	4
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	159
BshFI	GGCC	2 cut(s)	71, 116
BsiSI	CCGG	2 cut(s)	16, 151
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	16, 307
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	2 cut(s)	71, 116
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	71, 116
BspCNI	CTCAG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	163
BsrBI	CCGCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	3 cut(s)	151, 175, 302
BssSI	CACGAG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	262
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	175, 312
BstMAI	GTCTC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	3 cut(s)	15, 79, 150
BstV1I	GCAGC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	71, 116
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	175, 312
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
CciI	TCATGA	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	156, 278
CviAII	CATG	3 cut(s)	93, 164, 238
CviJI	RGCY	5 cut(s)	71, 116, 150, 198, 272
CviKI_1	RGCY	5 cut(s)	71, 116, 150, 198, 272
CviQI	GTAC	2 cut(s)	156, 278
DdeI	CTNAG	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	79
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	3 cut(s)	96, 167, 241
FaiI	YATR	4 cut(s)	94, 104, 165, 239
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	3 cut(s)	92, 163, 237
Fnu4HI	GCNGC	2 cut(s)	117, 148
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	117, 148
GluI	GCNGC	2 cut(s)	117, 148
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	71, 116
HapII	CCGG	2 cut(s)	16, 151
Hin1II	CATG	3 cut(s)	96, 167, 241
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	12, 125, 141, 245
HpaII	CCGG	2 cut(s)	16, 151
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	265, 296
Hpy188III	TCNNGA	2 cut(s)	122, 164
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	4, 53, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	262
Hsp92II	CATG	3 cut(s)	96, 167, 241
LpnPI	CCDG	5 cut(s)	29, 50, 66, 93, 164
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	40
MbiI	CCGCTC	1 cut(s)	119
MboII	GAAGA	2 cut(s)	201, 224
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	23, 61, 160, 213, 266
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	2 cut(s)	16, 151
MspR9I	CCNGG	3 cut(s)	17, 81, 152
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	2 cut(s)	17, 152
NlaIII	CATG	3 cut(s)	96, 167, 241
NmeAIII	GCCGAG	1 cut(s)	123
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	12, 125, 245
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	118, 149
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	157, 279
RsaNI	GTAC	2 cut(s)	156, 278
RseI	CAYNNNNRTG	1 cut(s)	168
SatI	GCNGC	2 cut(s)	117, 148
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	3 cut(s)	17, 81, 152
SetI	ASST	1 cut(s)	274
SfaNI	GCATC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	168
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	3 cut(s)	15, 79, 150
StyI	CCWWGG	1 cut(s)	175
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	3 cut(s)	12, 125, 245
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	2 cut(s)	81, 254
TspRI	CASTG	1 cut(s)	289
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.