RchiOBHm_Chr6g0294681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000655
Physical Location & Seq
Forward (+)
56894401 .. 56894951
551 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26448

Sequence Viewer

Length: 237 bp
ATGGCTCCCCAGAACTCAGAGACACCGTTAACTCGAGCTCAACGCCAAGATGCGCTTCTGAACATGTTTCCTGGCACTGCTAAGGTTATTCTTCGTCCAAGAACAAATCCAGATGGCTCTGAAATTGTTACCATAAGTGATTATGAGTTTCCTGATCTTAGATGTAAGCGCAGGTTGAAGAATCTCTATCAGGTATATAGTCTCTATAGAATTAATCCTGTGTGCTTAGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.97

Weight (kDa)

9.44

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 2 cut(s) 14, 206
Ama87I CYCGRG 1 cut(s) 33
AseI ATTAAT 1 cut(s) 213
AspLEI GCGC 2 cut(s) 55, 171
AvaI CYCGRG 1 cut(s) 33
BanII GRGCYC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 14, 206
BfmI CTRYAG 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 81
BseBI CCWGG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 33
BsmAI GTCTC 2 cut(s) 14, 206
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 162
BssMI GATC 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 27
BstDEI CTNAG 4 cut(s) 16, 81, 158, 226
BstHHI GCGC 2 cut(s) 55, 171
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 2 cut(s) 14, 206
BstMBI GATC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 162
CfoI GCGC 2 cut(s) 55, 171
CviAII CATG 1 cut(s) 64
CviJI RGCY 3 cut(s) 5, 38, 117
CviKI_1 RGCY 3 cut(s) 5, 38, 117
DdeI CTNAG 4 cut(s) 16, 81, 158, 226
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 1 cut(s) 67
FaiI YATR 6 cut(s) 65, 134, 144, 196, 198, 207
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 40
GlaI GCGC 2 cut(s) 54, 170
HhaI GCGC 2 cut(s) 55, 171
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 2 cut(s) 53, 169
HinP1I GCGC 2 cut(s) 53, 169
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 181
HpaI GTTAAC 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 3 cut(s) 19, 60, 121
Hpy188III TCNNGA 2 cut(s) 110, 152
Hpy8I GTNNAC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 27
HpyF3I CTNAG 4 cut(s) 16, 81, 158, 226
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 2 cut(s) 53, 169
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 23, 57, 84, 123, 157, 165, 176, 231
LweI GCATC 1 cut(s) 40
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 83, 190
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 123, 210
MseI TTAA 3 cut(s) 29, 213, 235
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 33
PciI ACATGT 1 cut(s) 63
PfeI GAWTC 1 cut(s) 181
PscI ACATGT 1 cut(s) 63
PshBI ATTAAT 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 1 cut(s) 33
SacI GAGCTC 1 cut(s) 40
SaqAI TTAA 3 cut(s) 29, 213, 235
Sau3AI GATC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 40
SetI ASST 4 cut(s) 40, 87, 176, 195
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 205
Sfr274I CTCGAG 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 2 cut(s) 123, 210
SstI GAGCTC 1 cut(s) 40
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 34
TasI AATT 2 cut(s) 123, 210
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 3 cut(s) 29, 213, 235
Tru9I TTAA 3 cut(s) 29, 213, 235
TscAI CASTG 1 cut(s) 82
TspRI CASTG 1 cut(s) 82
VspI ATTAAT 1 cut(s) 213
XceI RCATGY 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.