Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000655

Physical Location & Seq

Genomic Coordinates Forward (+)

55766566 .. 55769789

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG359000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCTACAGTTCGCTGAAGGTAGGTTTAAATTAGGCGGGGAAACTTTTCAATTTCAATCTACTATTCCATCTCCTGTTGCACGATCGCTGTTTACGGATGTGCAGTTTGTCAGGCCGAGGAAGGAAAAGAGGTCAGTGGTCATCAGGGAGGCCAATTCTAGGGCTTTAGTGAGTGCAGCTGATACCTTGGCAGTGGTATCAGTGGATGATTCTGTGCAAATGAAGAGGGGCAGACCAGTTTCCCCAGCTGTGTCCCCGAAGAAGATGAAGCATGGTCTGGAGGCAGTGTTTGAAAAATCATCATCCTCTTCCTCCCAACAACCAAAGAGTCTTACTCAAGTTCAAGATGAGCTTGTCAAGAAATATCCTCCCGGTGCTGTGGTTATTCTGAACAGAACTCCTCCGAGATCAGCTGATGATTTTAGGCGGGAGTATTTTCTGCAGAAATACCCTACTTGTGAGGAATGGATTCAACGGTTCTACAAGGCCAACCAAAACCCCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.97

Weight (kDa)

9.95

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000655)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27230 FvH4_2g27250 FvH4_2g27260 FvH4_2g27290 FvH4_2g27290 FvH4_3g22050 FvH4_7g19400 FvH4_7g19420 FvH4_7g26910 FvH4_7g26911 FvH4_7g26911 FvH4_7g27060 FvH4_7g27070
rosa_chinensis	RchiOBHm_Chr1g0373611 RchiOBHm_Chr1g0373961 RchiOBHm_Chr1g0374001 RchiOBHm_Chr1g0374041 RchiOBHm_Chr1g0374051 RchiOBHm_Chr6g0294671 RchiOBHm_Chr6g0294681 RchiOBHm_Chr6g0294701 RchiOBHm_Chr6g0294711 RchiOBHm_Chr6g0294721 RchiOBHm_Chr6g0294741
rosa_laevigata	RLG00000026787 RLG00000026813
rosa_multiflora	Rmu_co8111738.1_g000001 Rmu_sc0000475.1_g000008 Rmu_sc0000475.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283780 Rroxscaffold_4G00283790 Rroxscaffold_4G00284120 Rroxscaffold_7G00173070 Rroxscaffold_7G00173090
rosa_rugosa	Rorug01G0378400 Rorug01G0378400 Rorug01G0378400 Rorug01G0380200 Rorug05G0286100 Rorug06G0246400
rosa_samantha	Rh1AG390600 Rh1BG352200 Rh1BG354700 Rh1CG365000 Rh1CG367800 Rh1DG037500 Rh1DG382700 Rh1DG385400 Rh5BG368200 Rh5CG391500 Rh5DG382400 Rh6AG359000 Rh6AG359400 Rh6AG359500 Rh6AG359800 Rh6AG359900 Rh6AG360100 Rh6BG366300 Rh6BG366500 Rh6BG366600 Rh6CG373000 Rh6CG373200 Rh6CG373300 Rh6CG373400 Rh6CG373500 Rh6CG373700 Rh6DG359900 Rh6DG360100
rosa_wichuraiana	Rw1G034460 Rw1G034740 Rw5G033500 Rw5G033670 Rw6G031330 Rw6G031340 Rw6G031360 Rw6G031370 Rw6G031420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 427
AcuI	CTGAAG	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	5 cut(s)	50, 56, 293, 344, 473
AluBI	AGCT	4 cut(s)	179, 248, 352, 413
AluI	AGCT	4 cut(s)	179, 248, 352, 413
AoxI	GGCC	3 cut(s)	113, 150, 486
ApeKI	GCWGC	1 cut(s)	176
Asp700I	GAANNNNTTC	2 cut(s)	45, 468
AsuC2I	CCSGG	2 cut(s)	372, 501
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	76
BcnI	CCSGG	2 cut(s)	372, 501
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	2 cut(s)	5, 440
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	372, 501
BmrFI	CCNGG	2 cut(s)	372, 501
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpmI	CTGGAG	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	321
BpuMI	CCSGG	2 cut(s)	372, 501
BsaJI	CCNNGG	3 cut(s)	116, 186, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	116, 186, 499
BseGI	GGATG	3 cut(s)	103, 211, 302
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	244
BsgI	GTGCAG	2 cut(s)	122, 195
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	115, 152, 488
BsiEI	CGRYCG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	372, 501
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	115, 152, 488
Bsp143I	GATC	2 cut(s)	83, 407
BspACI	CCGC	2 cut(s)	36, 427
BspANI	GGCC	3 cut(s)	115, 152, 488
BspMAI	CTGCAG	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	116, 186, 499
BssMI	GATC	2 cut(s)	83, 407
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	9, 477
Bst6I	CTCTTC	2 cut(s)	218, 313
BstF5I	GGATG	3 cut(s)	103, 211, 302
BstKTI	GATC	2 cut(s)	86, 410
BstMBI	GATC	2 cut(s)	83, 407
BstMCI	CGRYCG	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	370, 499
BstSFI	CTRYAG	2 cut(s)	5, 440
BstV1I	GCAGC	1 cut(s)	188
BsuRI	GGCC	3 cut(s)	115, 152, 488
BtsCI	GGATG	3 cut(s)	103, 211, 302
BtsI	GCAGTG	2 cut(s)	198, 291
BtsIMutI	CAGTG	4 cut(s)	141, 198, 207, 291
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	8 cut(s)	115, 152, 164, 179, 248, 352, 413, 488
CviKI_1	RGCY	8 cut(s)	115, 152, 164, 179, 248, 352, 413, 488
DpnI	GATC	2 cut(s)	85, 409
DpnII	GATC	2 cut(s)	83, 407
DraI	TTTAAA	1 cut(s)	28
Eam1104I	CTCTTC	2 cut(s)	218, 313
EarI	CTCTTC	2 cut(s)	218, 313
Eco130I	CCWWGG	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	275
FaiI	YATR	1 cut(s)	273
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	271
FauI	CCCGC	2 cut(s)	29, 420
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	3 cut(s)	110, 218, 289
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	1 cut(s)	177
GsaI	CCCAGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	3 cut(s)	115, 152, 488
HapII	CCGG	2 cut(s)	372, 501
Hin1II	CATG	1 cut(s)	275
HinfI	GANTC	3 cut(s)	209, 328, 469
HpaII	CCGG	2 cut(s)	372, 501
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	390, 405
Hpy188III	TCNNGA	3 cut(s)	278, 344, 358
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	2 cut(s)	11, 115
HpyCH4III	ACNGT	2 cut(s)	9, 477
HpyCH4V	TGCA	5 cut(s)	80, 103, 176, 217, 442
Hsp92II	CATG	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	83, 407
LpnPI	CCDG	7 cut(s)	87, 97, 130, 249, 258, 263, 385
Lsp1109I	GCAGC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	159
MalI	GATC	2 cut(s)	85, 409
MboI	GATC	2 cut(s)	83, 407
MboII	GAAGA	4 cut(s)	235, 271, 274, 300
MluCI	AATT	3 cut(s)	29, 50, 154
MlyI	GAGTC	1 cut(s)	337
MroXI	GAANNNNTTC	2 cut(s)	45, 468
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	3 cut(s)	179, 248, 413
MspI	CCGG	2 cut(s)	372, 501
MspR9I	CCNGG	2 cut(s)	372, 501
NciI	CCSGG	2 cut(s)	372, 501
NdeII	GATC	2 cut(s)	83, 407
NlaIII	CATG	1 cut(s)	275
NmeAIII	GCCGAG	1 cut(s)	141
PdmI	GAANNNNTTC	2 cut(s)	45, 468
PfeI	GAWTC	2 cut(s)	209, 469
PkrI	GCNGC	1 cut(s)	178
Ple19I	CGATCG	1 cut(s)	86
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	444
PvuI	CGATCG	1 cut(s)	86
PvuII	CAGCTG	3 cut(s)	179, 248, 413
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	83, 407
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	2 cut(s)	372, 501
SetI	ASST	8 cut(s)	22, 26, 134, 181, 188, 250, 354, 415
SfcI	CTRYAG	2 cut(s)	5, 440
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
Sse9I	AATT	3 cut(s)	29, 50, 154
SsiI	CCGC	2 cut(s)	36, 427
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	370, 499
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	9, 477
TasI	AATT	3 cut(s)	29, 50, 154
TfiI	GAWTC	2 cut(s)	209, 469
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	4 cut(s)	141, 198, 207, 291
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	236, 281
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	4 cut(s)	141, 198, 207, 291
XmnI	GAANNNNTTC	2 cut(s)	45, 468
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.