Rw6G031340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000655
Physical Location & Seq
Forward (+)
55302671 .. 55303511
841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G031340.1

Sequence Viewer

Length: 333 bp
ATGGCTCCCCAGAACTCAGAGACACCGTTAACTCGAGCTCAACGCCAAGATGAGCTTCTGAACATGTTTCCTGGCACTGCTAAGGTTATTCTTCGTCCAAGAACAAATCCAGATGGCTCTGAAATTGTTACCATAAGTGATTATGAGTTTCCTGATCTTAGATGTAAGCGCTGGTTGAAGAATCTCTATCAGGCAATGCGTTTGTGTGGGAGAGATTATGGACGTCATGTAGCTGATATTCAATTAGATTTACCGACATTTTGTGGTATTGAAGTGGACCTCGATGCAATGGAGAAGGCAATGGGGAATGGCCTTGGCAGATCGATCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.44

Weight (kDa)

5.78

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 226
AcyI GRCGYC 1 cut(s) 223
AfeI AGCGCT 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 3 cut(s) 178, 242, 272
AjnI CCWGG 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 3 cut(s) 38, 55, 233
AluI AGCT 3 cut(s) 38, 55, 233
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 33
Aor51HI AGCGCT 1 cut(s) 170
AoxI GGCC 1 cut(s) 310
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 331
BfoI RGCGCY 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 81
Bsa29I ATCGAT 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 313
Bse3DI GCAATG 3 cut(s) 201, 294, 306
BseBI CCWGG 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 313
BseMI GCAATG 3 cut(s) 201, 294, 306
BseMII CTCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 312
BshVI ATCGAT 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 14
BsnI GGCC 1 cut(s) 312
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 154, 320, 324
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 29
BspDI ATCGAT 1 cut(s) 323
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 3 cut(s) 201, 294, 306
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 3 cut(s) 154, 320, 324
BssNI GRCGYC 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 223
BstDEI CTNAG 3 cut(s) 16, 81, 158
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 3 cut(s) 157, 323, 327
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 154, 320, 324
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 323
BsuRI GGCC 1 cut(s) 312
BsuTUI ATCGAT 1 cut(s) 323
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 277
ClaI ATCGAT 1 cut(s) 323
CviAII CATG 2 cut(s) 64, 227
CviJI RGCY 6 cut(s) 5, 38, 55, 117, 233, 312
CviKI_1 RGCY 6 cut(s) 5, 38, 55, 117, 233, 312
DdeI CTNAG 3 cut(s) 16, 81, 158
DpnI GATC 3 cut(s) 156, 322, 326
DpnII GATC 3 cut(s) 154, 320, 324
Ecl136II GAGCTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 277
Eco47III AGCGCT 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 2 cut(s) 67, 230
FaiI YATR 5 cut(s) 65, 134, 144, 219, 228
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 2 cut(s) 63, 226
FriOI GRGCYC 1 cut(s) 40
FspBI CTAG 1 cut(s) 331
GlaI GCGC 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 1 cut(s) 312
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 2 cut(s) 67, 230
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 181
HpaI GTTAAC 1 cut(s) 30
Hpy166II GTNNAC 2 cut(s) 30, 277
Hpy188I TCNGA 3 cut(s) 19, 60, 121
Hpy188III TCNNGA 2 cut(s) 110, 152
Hpy8I GTNNAC 2 cut(s) 30, 277
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 3 cut(s) 16, 81, 158
HpySE526I ACGT 1 cut(s) 223
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 2 cut(s) 67, 230
HspAI GCGC 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 3 cut(s) 154, 320, 324
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 7 cut(s) 23, 57, 84, 123, 157, 165, 176
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 331
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 127
MalI GATC 3 cut(s) 156, 322, 326
MboI GATC 3 cut(s) 154, 320, 324
MboII GAAGA 2 cut(s) 83, 190
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 123, 242
MnlI CCTC 1 cut(s) 290
MseI TTAA 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
NdeII GATC 3 cut(s) 154, 320, 324
NlaIII CATG 2 cut(s) 67, 230
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 33
PciI ACATGT 1 cut(s) 63
PfeI GAWTC 1 cut(s) 181
PscI ACATGT 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 277
PspXI VCTCGAGB 1 cut(s) 33
SacI GAGCTC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 3 cut(s) 154, 320, 324
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 40
SetI ASST 6 cut(s) 40, 57, 87, 226, 235, 282
SfaNI GCATC 1 cut(s) 274
Sfr274I CTCGAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 2 cut(s) 123, 242
SspMI CTAG 1 cut(s) 331
SstI GAGCTC 1 cut(s) 40
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 27
TaiI ACGT 1 cut(s) 226
TaqI TCGA 3 cut(s) 34, 282, 323
TasI AATT 2 cut(s) 123, 242
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 82
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 277
XceI RCATGY 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 33
XspI CTAG 1 cut(s) 331
ZraI GACGTC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.