Rroxscaffold_4G00284120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000655
Physical Location & Seq
Forward (+)
5829766 .. 5830996
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284120.1

Sequence Viewer

Length: 378 bp
ATGGCTCAATCAAGCTCGGAAGAATCCGATTTGTTCTCCATATTCACTGATTTATTTTTTGAAAAACCAAAACCACAATCCCAACCAAAACCACCAGGTACTCCGAGTCAACGTCAGGATGAGCTTGTGAAGAAATTTCCAGGGTCAAAGATTATTCGTCGTCCAAATCCAATGGAAGAAGCCGATGATTCAACTTACATTAAATTTCCAGAACATGACTGCGGGAATTATATGGAAAGATTCTATGAGGCAGCAGGCAGCGCGCGTCTTTACGGGAAGGATTGTAAGATTGATAAAACTAGTTGCATGTATCAAAGAATAATACGCAAGAGTTGTGGTATTGAAGTTTATTACCCTGCAGATAAGTTAAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.42

Weight (kDa)

7.6

Isoelectric Point (pI)

61.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 263, 265
AciI CCGC 1 cut(s) 222
AcsI RAATTY 2 cut(s) 134, 203
AfaI GTAC 1 cut(s) 100
AgsI TTSAA 3 cut(s) 62, 192, 344
AhlI ACTAGT 1 cut(s) 299
AjnI CCWGG 2 cut(s) 94, 139
AluBI AGCT 2 cut(s) 15, 124
AluI AGCT 2 cut(s) 15, 124
ApeKI GCWGC 2 cut(s) 251, 258
ApoI RAATTY 2 cut(s) 134, 203
AspLEI GCGC 2 cut(s) 263, 265
BbvI GCAGC 2 cut(s) 263, 270
BciT130I CCWGG 2 cut(s) 96, 141
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 357
BisI GCNGC 2 cut(s) 252, 259
BlsI GCNGC 2 cut(s) 253, 260
Bme1390I CCNGG 2 cut(s) 96, 141
BmrFI CCNGG 2 cut(s) 96, 141
BsaJI CCNNGG 1 cut(s) 140
BseBI CCWGG 2 cut(s) 96, 141
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 124
BsePI GCGCGC 1 cut(s) 261
BseXI GCAGC 2 cut(s) 263, 270
Bsh1236I CGCG 2 cut(s) 263, 265
BspACI CCGC 1 cut(s) 222
BspFNI CGCG 2 cut(s) 263, 265
BspMAI CTGCAG 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 140
BssHII GCGCGC 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 96, 141
BstC8I GCNNGC 2 cut(s) 256, 263
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 2 cut(s) 263, 265
BstHHI GCGC 2 cut(s) 263, 265
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 2 cut(s) 96, 141
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 2 cut(s) 94, 139
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 2 cut(s) 263, 265
BstV1I GCAGC 2 cut(s) 263, 270
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 256, 263
CfoI GCGC 2 cut(s) 263, 265
CseI GACGC 1 cut(s) 254
CsiI ACCWGGT 1 cut(s) 94
Csp6I GTAC 1 cut(s) 99
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 2 cut(s) 215, 307
CviJI RGCY 4 cut(s) 5, 15, 124, 182
CviKI_1 RGCY 4 cut(s) 5, 15, 124, 182
CviQI GTAC 1 cut(s) 99
EcoRII CCWGG 2 cut(s) 94, 139
FaeI CATG 2 cut(s) 218, 310
FaiI YATR 6 cut(s) 41, 216, 231, 233, 246, 308
FatI CATG 2 cut(s) 214, 306
FauI CCCGC 1 cut(s) 215
Fnu4HI GCNGC 2 cut(s) 252, 259
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 252, 259
FspBI CTAG 1 cut(s) 300
GlaI GCGC 2 cut(s) 262, 264
GluI GCNGC 2 cut(s) 252, 259
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 263, 265
Hin1II CATG 2 cut(s) 218, 310
Hin6I GCGC 2 cut(s) 261, 263
HinP1I GCGC 2 cut(s) 261, 263
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HinfI GANTC 4 cut(s) 23, 106, 188, 240
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 19, 28, 105
Hpy188III TCNNGA 2 cut(s) 116, 209
Hpy8I GTNNAC 1 cut(s) 110
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 306, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 2 cut(s) 218, 310
HspAI GCGC 2 cut(s) 261, 263
LpnPI CCDG 8 cut(s) 81, 101, 108, 126, 153, 222, 240, 369
Lsp1109I GCAGC 2 cut(s) 263, 270
MabI ACCWGGT 1 cut(s) 94
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 112
MboII GAAGA 3 cut(s) 32, 142, 188
MluCI AATT 3 cut(s) 134, 203, 226
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 1 cut(s) 241
MseI TTAA 3 cut(s) 201, 368, 376
MspR9I CCNGG 2 cut(s) 96, 141
MvaI CCWGG 2 cut(s) 96, 141
MvnI CGCG 2 cut(s) 263, 265
MwoI GCNNNNNNNGC 1 cut(s) 260
NlaIII CATG 2 cut(s) 218, 310
NspI RCATGY 1 cut(s) 310
PauI GCGCGC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 23, 188, 240
PkrI GCNGC 2 cut(s) 253, 260
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 94, 139
PspGI CCWGG 2 cut(s) 94, 139
PstI CTGCAG 1 cut(s) 361
PteI GCGCGC 1 cut(s) 261
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SaqAI TTAA 3 cut(s) 201, 368, 376
SatI GCNGC 2 cut(s) 252, 259
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 96, 141
SetI ASST 4 cut(s) 17, 100, 115, 126
SexAI ACCWGGT 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 357
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 3 cut(s) 134, 203, 226
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 94, 139
TaiI ACGT 1 cut(s) 115
TasI AATT 3 cut(s) 134, 203, 226
TfiI GAWTC 3 cut(s) 23, 188, 240
Tru1I TTAA 3 cut(s) 201, 368, 376
Tru9I TTAA 3 cut(s) 201, 368, 376
TscAI CASTG 1 cut(s) 52
TseI GCWGC 2 cut(s) 251, 258
TspRI CASTG 1 cut(s) 52
XapI RAATTY 2 cut(s) 134, 203
XceI RCATGY 1 cut(s) 310
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.