Rh6CG373400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000655
Physical Location & Seq
Reverse (-)
55934176 .. 55935496
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG373400.1

Sequence Viewer

Length: 456 bp
ATGTACAAGAACAAACCCAAGAAACATAGGAGCCCAATTTGTTTGTGTCTTGGTAAAGGGATTCGGCTTCTCATCCACATACAGCCACCGGCGGAAACAGAAACTAGCTACATGGCTCCCCAGAATTCAGAGACACCGTTAACTCGAGCTCAACGCCAAGATGAGCTTCTGAACATGTTTCCTGGCACTGCTAAGGTTATTCTTCGTCCAAGAACAAATCCAGATGGCTCTGAAATTGTTACCGTAACTGATTATGAGTTTCCTGATCTTAGATGTAAGCTCTGGTTGAAGAATCTCTATCAGGCAATGCGTTTATGTGGGAGGGATCATGGAAATTTCGTAGCTGATTTCCAAGGAGGGTTAAAGACATTCTGTGGCATTGAAGTGGACCTTGATGAGATGGAGAAGCCAATAGGGAATGGTTTTGCTACATCTCCCAGTTCGGTTCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.03

Weight (kDa)

8.28

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AclWI GGATC 1 cut(s) 333
AcsI RAATTY 2 cut(s) 124, 334
AfaI GTAC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 289, 383
AjnI CCWGG 1 cut(s) 181
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 5 cut(s) 108, 149, 166, 280, 344
AluI AGCT 5 cut(s) 108, 149, 166, 280, 344
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 144
ApoI RAATTY 2 cut(s) 124, 334
AspS9I GGNCC 1 cut(s) 388
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 1 cut(s) 388
BanII GRGCYC 2 cut(s) 35, 151
Bbv12I GWGCWC 1 cut(s) 151
BccI CCATC 2 cut(s) 218, 394
BciT130I CCWGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 388
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 2 cut(s) 32, 117
BmrFI CCNGG 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 432
BmuI ACTGGG 1 cut(s) 432
Bpu10I CCTNAGC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 352
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 438
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 35, 151
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 265, 325
BspACI CCGC 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 32, 117
BspPI GGATC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 438
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 2 cut(s) 265, 325
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 138, 244
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 2 cut(s) 192, 269
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 2 cut(s) 268, 328
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 265, 325
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 181
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 388
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 112, 175, 329
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 192, 269
DpnI GATC 2 cut(s) 267, 327
DpnII GATC 2 cut(s) 265, 325
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 352
Eco24I GRGCYC 2 cut(s) 35, 151
Eco47I GGWCC 1 cut(s) 388
Eco53kI GAGCTC 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 352
EcoT38I GRGCYC 2 cut(s) 35, 151
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 3 cut(s) 115, 178, 332
FaiI YATR 7 cut(s) 27, 80, 113, 176, 255, 316, 330
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 375, 407
FatI CATG 3 cut(s) 111, 174, 328
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 2 cut(s) 35, 151
FspBI CTAG 1 cut(s) 105
HapII CCGG 1 cut(s) 89
Hin1II CATG 3 cut(s) 115, 178, 332
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 2 cut(s) 61, 292
HpaI GTTAAC 1 cut(s) 141
HpaII CCGG 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 141, 388
Hpy188I TCNGA 3 cut(s) 130, 171, 232
Hpy188III TCNNGA 2 cut(s) 221, 263
Hpy8I GTNNAC 2 cut(s) 141, 388
HpyCH4III ACNGT 2 cut(s) 138, 244
HpyF3I CTNAG 2 cut(s) 192, 269
Hsp92II CATG 3 cut(s) 115, 178, 332
KspAI GTTAAC 1 cut(s) 141
Kzo9I GATC 2 cut(s) 265, 325
LmnI GCTCC 2 cut(s) 30, 121
LpnPI CCDG 9 cut(s) 102, 134, 168, 195, 234, 268, 276, 287, 451
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 238, 244
MalI GATC 2 cut(s) 267, 327
MboI GATC 2 cut(s) 265, 325
MboII GAAGA 2 cut(s) 194, 301
MhlI GDGCHC 2 cut(s) 35, 151
MluCI AATT 4 cut(s) 36, 124, 234, 334
MnlI CCTC 2 cut(s) 315, 350
MseI TTAA 2 cut(s) 140, 362
MslI CAYNNNNRTG 1 cut(s) 383
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
NdeII GATC 2 cut(s) 265, 325
NlaIII CATG 3 cut(s) 115, 178, 332
NlaIV GGNNCC 2 cut(s) 32, 117
NspI RCATGY 1 cut(s) 178
PaeR7I CTCGAG 1 cut(s) 144
PciI ACATGT 1 cut(s) 174
PfeI GAWTC 2 cut(s) 61, 292
PscI ACATGT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 32, 117
PspPI GGNCC 1 cut(s) 388
PspXI VCTCGAGB 1 cut(s) 144
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 140, 362
Sau3AI GATC 2 cut(s) 265, 325
Sau96I GGNCC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 2 cut(s) 35, 151
SetI ASST 7 cut(s) 110, 151, 168, 198, 282, 346, 393
Sfr274I CTCGAG 1 cut(s) 144
SgrAI CRCCGGYG 1 cut(s) 88
SinI GGWCC 1 cut(s) 388
SlaI CTCGAG 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 4 cut(s) 36, 124, 234, 334
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 105
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 138, 244
TaqI TCGA 1 cut(s) 145
TasI AATT 4 cut(s) 36, 124, 234, 334
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 61, 292
Tru1I TTAA 2 cut(s) 140, 362
Tru9I TTAA 2 cut(s) 140, 362
TscAI CASTG 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 437
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 388
XapI RAATTY 2 cut(s) 124, 334
XceI RCATGY 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 144
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.