Rh6AG359900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000655
Physical Location & Seq
Reverse (-)
55847922 .. 55849362
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG359900.1

Sequence Viewer

Length: 375 bp
ATGTTCTTAGGTTTGAGATCGTCCGGAAGAATTGGAGGAAAATCCACCGGCCTAAGGTCAGGTCCCAGATTAAGTACCAGTGAACAACAAGATGACCTTGTGAGGAGATATCCTGGTGCAGCTTATATTGTTACTCGTCGAAGATCAGAACCTACCGCTCGCGCTGGCGCTGTGGCTTCTGACGAAAATTATCCGTTTGATTACTGCCAGAGGCTTCTGGATTACTACTATGATACAACACGCTTGTGTGGGAGCGACTATACCGATAGTGTATTATATCGCAACGCTATACTTAATATTTGTGGTATTCAGGTGTCACCTGATGAGTTAGACAAGAAGGCCTCTACTTCCACCAACGCTGCAGCTCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.71

Weight (kDa)

8.47

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 158
AccII CGCG 1 cut(s) 162
AccIII TCCGGA 1 cut(s) 23
AciI CCGC 1 cut(s) 156
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 54
AjnI CCWGG 1 cut(s) 112
AleI CACNNNNGTG 1 cut(s) 244
AluBI AGCT 2 cut(s) 122, 365
AluI AGCT 2 cut(s) 122, 365
Aor13HI TCCGGA 1 cut(s) 23
AoxI GGCC 2 cut(s) 49, 339
ApeKI GCWGC 3 cut(s) 119, 359, 362
AspLEI GCGC 2 cut(s) 164, 170
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 309
AvaII GGWCC 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 53
BbvI GCAGC 2 cut(s) 131, 346
BciT130I CCWGG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 171
BisI GCNGC 3 cut(s) 120, 360, 363
BlsI GCNGC 3 cut(s) 121, 361, 364
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 78
Bse21I CCTNAGG 1 cut(s) 53
BseAI TCCGGA 1 cut(s) 23
BseBI CCWGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 131, 346
BsgI GTGCAG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 51, 341
BsiSI CCGG 2 cut(s) 24, 48
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 2 cut(s) 51, 341
Bsp13I TCCGGA 1 cut(s) 23
Bsp143I GATC 2 cut(s) 17, 143
BspACI CCGC 1 cut(s) 156
BspANI GGCC 2 cut(s) 51, 341
BspEI TCCGGA 1 cut(s) 23
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 364
BsrBI CCGCTC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 47
BssMI GATC 2 cut(s) 17, 143
Bst2UI CCWGG 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 160, 166
BstDEI CTNAG 2 cut(s) 7, 53
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 2 cut(s) 164, 170
BstKTI GATC 2 cut(s) 20, 146
BstMBI GATC 2 cut(s) 17, 143
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 131, 346
Bsu36I CCTNAGG 1 cut(s) 53
BsuRI GGCC 2 cut(s) 51, 341
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 160, 166
CfoI GCGC 2 cut(s) 164, 170
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 75
CviJI RGCY 6 cut(s) 51, 122, 176, 214, 341, 365
CviKI_1 RGCY 6 cut(s) 51, 122, 176, 214, 341, 365
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 2 cut(s) 7, 53
DpnI GATC 2 cut(s) 19, 145
DpnII GATC 2 cut(s) 17, 143
Eco147I AGGCCT 1 cut(s) 341
Eco32I GATATC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 62
Eco81I CCTNAGG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 112
EcoRV GATATC 1 cut(s) 110
FaiI YATR 5 cut(s) 126, 231, 261, 277, 290
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 120, 360, 363
Fsp4HI GCNGC 3 cut(s) 120, 360, 363
GlaI GCGC 2 cut(s) 163, 169
GluI GCNGC 3 cut(s) 120, 360, 363
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 2 cut(s) 51, 341
HapII CCGG 2 cut(s) 24, 48
HhaI GCGC 2 cut(s) 164, 170
Hin6I GCGC 2 cut(s) 162, 168
HinP1I GCGC 2 cut(s) 162, 168
HpaII CCGG 2 cut(s) 24, 48
HphI GGTGA 1 cut(s) 309
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 2 cut(s) 148, 181
Hpy188III TCNNGA 2 cut(s) 24, 218
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 331
HpyCH4V TGCA 2 cut(s) 119, 362
HpyF3I CTNAG 2 cut(s) 7, 53
HspAI GCGC 2 cut(s) 162, 168
Kpn2I TCCGGA 1 cut(s) 23
Kzo9I GATC 2 cut(s) 17, 143
LmnI GCTCC 1 cut(s) 252
Lsp1109I GCAGC 2 cut(s) 131, 346
MaeIII GTNAC 2 cut(s) 130, 315
MalI GATC 2 cut(s) 19, 145
MbiI CCGCTC 1 cut(s) 158
MboI GATC 2 cut(s) 17, 143
MboII GAAGA 2 cut(s) 39, 153
MluCI AATT 2 cut(s) 30, 187
MnlI CCTC 4 cut(s) 29, 96, 204, 352
MroI TCCGGA 1 cut(s) 23
MseI TTAA 2 cut(s) 71, 294
MslI CAYNNNNRTG 1 cut(s) 244
MspI CCGG 2 cut(s) 24, 48
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 162
NdeII GATC 2 cut(s) 17, 143
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 244
PceI AGGCCT 1 cut(s) 341
PkrI GCNGC 3 cut(s) 121, 361, 364
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 62
PspPPI RGGWCCY 1 cut(s) 62
PstI CTGCAG 1 cut(s) 364
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 244
SaqAI TTAA 2 cut(s) 71, 294
SatI GCNGC 3 cut(s) 120, 360, 363
Sau3AI GATC 2 cut(s) 17, 143
Sau96I GGNCC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 114
SetI ASST 9 cut(s) 13, 59, 64, 99, 124, 154, 315, 322, 367
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 244
Sse9I AATT 2 cut(s) 30, 187
SseBI AGGCCT 1 cut(s) 341
SsiI CCGC 1 cut(s) 156
SspI AATATT 1 cut(s) 298
StuI AGGCCT 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 112
TaqI TCGA 1 cut(s) 139
TasI AATT 2 cut(s) 30, 187
Tru1I TTAA 2 cut(s) 71, 294
Tru9I TTAA 2 cut(s) 71, 294
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 3 cut(s) 119, 359, 362
Tsp45I GTSAC 1 cut(s) 315
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.