RchiOBHm_Chr1g0374001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000655
Physical Location & Seq
Reverse (-)
61979805 .. 61981270
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59783

Sequence Viewer

Length: 420 bp
ATGAGCCGAAGCCCAATGAACCCCCGAGTGCATACAGAAGAAACTCCGGGCAAACCCTCCTCGACTAGTTACATGGCCTGCTCCGATTCCGGTTCACTTTTCCGTCGCCGTTCCAAGGAATCATCATCCAGTTCCCCCCCAAAACCAAAGAGTCTTAGTGAAGTTCAAGATGAGCTTGTCAAGAAATATCCTCCCGGTGCTGTGGTTATTCTGACTAGAACTCCGTCGAGATCAGCTGATGATTTCAGGTGGGACTATCACAGGCCGAAATACCGATATCCTACTTGTGAGGAATGGATTGAAAAGTTCTACGAGTACCAACGCTTGTGTGGAAGAAATTGTCCCGTATGGTCCAAGATACAGATTGAGACCTGTGGTCTTGAGGTGTACCCCGAAAAGCTATTGAATGACTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.08

Weight (kDa)

8.8

Isoelectric Point (pI)

87.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 317, 389
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 3 cut(s) 167, 302, 406
AhdI GACNNNNNGTC 1 cut(s) 375
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 3 cut(s) 175, 236, 400
AluI AGCT 3 cut(s) 175, 236, 400
Alw26I GTCTC 1 cut(s) 362
Ama87I CYCGRG 2 cut(s) 24, 412
AoxI GGCC 2 cut(s) 75, 263
AspS9I GGNCC 1 cut(s) 351
AsuC2I CCSGG 2 cut(s) 48, 195
AvaI CYCGRG 2 cut(s) 24, 412
AvaII GGWCC 1 cut(s) 351
BceAI ACGGC 1 cut(s) 93
BcnI CCSGG 2 cut(s) 48, 195
BcoDI GTCTC 1 cut(s) 362
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 216
Bme1390I CCNGG 2 cut(s) 48, 195
Bme18I GGWCC 1 cut(s) 351
BmeRI GACNNNNNGTC 1 cut(s) 375
BmeT110I CYCGRG 2 cut(s) 24, 412
BmgT120I GGNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 48, 195
BpuEI CTTGAG 1 cut(s) 401
BpuMI CCSGG 2 cut(s) 48, 195
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 49
BshFI GGCC 2 cut(s) 77, 265
BsiHKCI CYCGRG 2 cut(s) 24, 412
BsiSI CCGG 3 cut(s) 47, 90, 195
BslFI GGGAC 2 cut(s) 266, 327
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 266, 327
BsnI GGCC 2 cut(s) 77, 265
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 2 cut(s) 24, 412
Bsp143I GATC 1 cut(s) 230
BspANI GGCC 2 cut(s) 77, 265
BspTNI GGTCTC 1 cut(s) 362
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 230
BstSCI CCNGG 2 cut(s) 46, 193
BsuRI GGCC 2 cut(s) 77, 265
BtsCI GGATG 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 351
Csp6I GTAC 2 cut(s) 316, 388
CviAII CATG 1 cut(s) 73
CviJI RGCY 7 cut(s) 6, 12, 77, 175, 236, 265, 400
CviKI_1 RGCY 7 cut(s) 6, 12, 77, 175, 236, 265, 400
CviQI GTAC 2 cut(s) 316, 388
DdeI CTNAG 1 cut(s) 155
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
DriI GACNNNNNGTC 1 cut(s) 375
Eam1105I GACNNNNNGTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 351
Eco88I CYCGRG 2 cut(s) 24, 412
EcoRV GATATC 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 76
FaiI YATR 3 cut(s) 33, 74, 349
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 2 cut(s) 266, 327
FatI CATG 1 cut(s) 72
FokI GGATG 1 cut(s) 112
FspBI CTAG 2 cut(s) 66, 216
HaeIII GGCC 2 cut(s) 77, 265
HapII CCGG 3 cut(s) 47, 90, 195
Hin1II CATG 1 cut(s) 76
HinfI GANTC 4 cut(s) 86, 119, 151, 410
HpaII CCGG 3 cut(s) 47, 90, 195
Hpy166II GTNNAC 2 cut(s) 95, 388
Hpy188I TCNGA 2 cut(s) 85, 213
Hpy188III TCNNGA 4 cut(s) 167, 181, 228, 380
Hpy8I GTNNAC 2 cut(s) 95, 388
Hpy99I CGWCG 2 cut(s) 108, 229
HpyCH4V TGCA 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 155
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 1 cut(s) 230
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 8 cut(s) 60, 91, 103, 142, 208, 232, 247, 385
MaeI CTAG 2 cut(s) 66, 216
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 2 cut(s) 50, 345
MluCI AATT 1 cut(s) 337
MlyI GAGTC 2 cut(s) 160, 404
MnlI CCTC 5 cut(s) 67, 70, 201, 283, 376
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 3 cut(s) 47, 90, 195
MspR9I CCNGG 2 cut(s) 48, 195
NciI CCSGG 2 cut(s) 48, 195
NdeII GATC 1 cut(s) 230
NlaIII CATG 1 cut(s) 76
PaeR7I CTCGAG 1 cut(s) 412
PfeI GAWTC 2 cut(s) 86, 119
PleI GAGTC 2 cut(s) 159, 404
PpsI GAGTC 2 cut(s) 159, 404
PspPI GGNCC 1 cut(s) 351
PspXI VCTCGAGB 1 cut(s) 412
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 317, 389
RsaNI GTAC 2 cut(s) 316, 388
Sau3AI GATC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 2 cut(s) 160, 404
ScrFI CCNGG 2 cut(s) 48, 195
SetI ASST 6 cut(s) 177, 238, 251, 374, 387, 402
Sfr274I CTCGAG 1 cut(s) 412
SinI GGWCC 1 cut(s) 351
SlaI CTCGAG 1 cut(s) 412
SmlI CTYRAG 2 cut(s) 380, 412
SmoI CTYRAG 2 cut(s) 380, 412
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 1 cut(s) 337
SspMI CTAG 2 cut(s) 66, 216
StyD4I CCNGG 2 cut(s) 46, 193
StyI CCWWGG 1 cut(s) 114
TaqI TCGA 3 cut(s) 62, 227, 413
TasI AATT 1 cut(s) 337
TfiI GAWTC 2 cut(s) 86, 119
TspDTI ATGAA 1 cut(s) 32
TspGWI ACGGA 2 cut(s) 92, 213
VpaK11BI GGWCC 1 cut(s) 351
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XhoI CTCGAG 1 cut(s) 412
XspI CTAG 2 cut(s) 66, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.