Rw1G034460

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
62357689 .. 62358746
1058 bp
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UTR
Exon/CDS
Intron
Rw1G034460.1

Sequence Viewer

Length: 354 bp
ATGGGTCTTTTCAGCTCCGATTCCGGTTCACTTTTCCGTCGCCGTTCCAAAGAATCATCATCCAGTTCCCCCCCAAAACCAAAGAGTCTTAGTGAAGTTCAAGATGAGCTTGTCAAGAAATATCCTCCCGGTGCTGTGGTTATTCTGACTAGAACTCCGTCGAGATCAGCTGATGATTTCAGGTGGGACTATCACAGGCCGAAATACCGATATCCTACTTGTGAGGAATGGATTGAAAAGTTCTACGAGTACCAACGCTTGTGTGGAAGAAATTGTCCCGTATGGTCCAAGATACAGATTGAGACCTGTGGTCTTGAAGTGTACCCCGAAAAGCTATTGAATGACTCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.66

Weight (kDa)

8.68

Isoelectric Point (pI)

75.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 251, 323
AgsI TTSAA 4 cut(s) 101, 236, 317, 340
AhdI GACNNNNNGTC 1 cut(s) 309
AluBI AGCT 4 cut(s) 15, 109, 170, 334
AluI AGCT 4 cut(s) 15, 109, 170, 334
Alw26I GTCTC 1 cut(s) 296
AoxI GGCC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 285
AsuC2I CCSGG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 285
BceAI ACGGC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 285
BmeRI GACNNNNNGTC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bse1I ACTGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 63
BshFI GGCC 1 cut(s) 199
BsiSI CCGG 2 cut(s) 24, 129
BslFI GGGAC 2 cut(s) 200, 261
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 2 cut(s) 200, 261
BsnI GGCC 1 cut(s) 199
Bso31I GGTCTC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 164
BspANI GGCC 1 cut(s) 199
BspTNI GGTCTC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 63
BssMI GATC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 59
BstKTI GATC 1 cut(s) 167
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 127
BsuRI GGCC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 285
Csp6I GTAC 2 cut(s) 250, 322
CviJI RGCY 5 cut(s) 15, 109, 170, 199, 334
CviKI_1 RGCY 5 cut(s) 15, 109, 170, 199, 334
CviQI GTAC 2 cut(s) 250, 322
DdeI CTNAG 1 cut(s) 89
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
DriI GACNNNNNGTC 1 cut(s) 309
Eam1105I GACNNNNNGTC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 296
Eco32I GATATC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 285
EcoRV GATATC 1 cut(s) 212
FaiI YATR 1 cut(s) 283
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 2 cut(s) 200, 261
FokI GGATG 1 cut(s) 46
FspBI CTAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 199
HapII CCGG 2 cut(s) 24, 129
HinfI GANTC 4 cut(s) 20, 53, 85, 344
HpaII CCGG 2 cut(s) 24, 129
Hpy166II GTNNAC 2 cut(s) 29, 322
Hpy188I TCNGA 2 cut(s) 19, 147
Hpy188III TCNNGA 4 cut(s) 101, 115, 162, 314
Hpy8I GTNNAC 2 cut(s) 29, 322
Hpy99I CGWCG 2 cut(s) 42, 163
HpyF3I CTNAG 1 cut(s) 89
Kzo9I GATC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 37, 76, 142, 166, 181, 319
MaeI CTAG 1 cut(s) 150
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 1 cut(s) 279
MluCI AATT 1 cut(s) 271
MlyI GAGTC 2 cut(s) 94, 338
MnlI CCTC 2 cut(s) 135, 217
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 2 cut(s) 24, 129
MspR9I CCNGG 1 cut(s) 129
NciI CCSGG 1 cut(s) 129
NdeII GATC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 20, 53
PleI GAGTC 2 cut(s) 93, 338
PpsI GAGTC 2 cut(s) 93, 338
PspPI GGNCC 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 2 cut(s) 251, 323
RsaNI GTAC 2 cut(s) 250, 322
Sau3AI GATC 1 cut(s) 164
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 2 cut(s) 94, 338
ScrFI CCNGG 1 cut(s) 129
SetI ASST 6 cut(s) 17, 111, 172, 185, 308, 336
SinI GGWCC 1 cut(s) 285
Sse9I AATT 1 cut(s) 271
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 127
TaqI TCGA 2 cut(s) 161, 347
TasI AATT 1 cut(s) 271
TfiI GAWTC 2 cut(s) 20, 53
TspGWI ACGGA 2 cut(s) 26, 147
VpaK11BI GGWCC 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.