Rh1DG385400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
60555614 .. 60556723
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG385400.1

Sequence Viewer

Length: 420 bp
ATGAACCCCCGAGTGCATACAGAAGAAACTCCGGGCAAACCCTCCTCGACTAGTTACATATGGGTCTTTTCAGTTCCGATTCCGGTTCACTTTTCCGTCGCCGTTCCAAAGAATCATCGTCCAGTTCCCCCCCCCCCCCCAAAACCAAAGAGTCTTAGTGAAGTTCAAGATGAGCTTGTCAAGAAATATCCTCCCGGTGCTGTGGTTATTCTGACTAGAACTCCGTCAAGATCAGCTGATGATTTCAGGTGGGACTATCTCAGGCCGAAATACCGATATCCTACTTGTGAGGAATGGATTGAAAAGTTCTACGAGTACCAACGCTTGTGTGGAAGAAATTGTCCCGTATGGTCCAAGATACAGATTGAGACCTGTGGTCTTGAGGTGTACCCCGAAAAGCTATTGAATGACTCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.16

Weight (kDa)

8.66

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 317, 389
AgsI TTSAA 3 cut(s) 167, 302, 406
AhdI GACNNNNNGTC 1 cut(s) 375
AhlI ACTAGT 1 cut(s) 50
AluBI AGCT 3 cut(s) 175, 236, 400
AluI AGCT 3 cut(s) 175, 236, 400
Alw26I GTCTC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 351
AsuC2I CCSGG 2 cut(s) 33, 195
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 351
BceAI ACGGC 1 cut(s) 86
BcnI CCSGG 2 cut(s) 33, 195
BcoDI GTCTC 1 cut(s) 362
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 2 cut(s) 51, 216
Bme1390I CCNGG 2 cut(s) 33, 195
Bme18I GGWCC 1 cut(s) 351
BmeRI GACNNNNNGTC 1 cut(s) 375
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 33, 195
BpuEI CTTGAG 1 cut(s) 401
BpuMI CCSGG 2 cut(s) 33, 195
BsaI GGTCTC 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bse1I ACTGG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 34
BshFI GGCC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 3 cut(s) 32, 83, 195
BslFI GGGAC 2 cut(s) 266, 327
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 266, 327
BsnI GGCC 1 cut(s) 265
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 1 cut(s) 230
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 362
BsrI ACTGG 1 cut(s) 122
BssMI GATC 1 cut(s) 230
BstDEI CTNAG 2 cut(s) 155, 260
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 230
BstSCI CCNGG 2 cut(s) 31, 193
BsuRI GGCC 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 351
Csp6I GTAC 2 cut(s) 316, 388
CviJI RGCY 4 cut(s) 175, 236, 265, 400
CviKI_1 RGCY 4 cut(s) 175, 236, 265, 400
CviQI GTAC 2 cut(s) 316, 388
DdeI CTNAG 2 cut(s) 155, 260
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
DriI GACNNNNNGTC 1 cut(s) 375
Eam1105I GACNNNNNGTC 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 9
EcoRV GATATC 1 cut(s) 278
FaiI YATR 4 cut(s) 18, 59, 61, 349
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 2 cut(s) 266, 327
FauNDI CATATG 1 cut(s) 59
FspBI CTAG 2 cut(s) 51, 216
HaeIII GGCC 1 cut(s) 265
HapII CCGG 3 cut(s) 32, 83, 195
HinfI GANTC 4 cut(s) 79, 112, 151, 410
HpaII CCGG 3 cut(s) 32, 83, 195
Hpy166II GTNNAC 2 cut(s) 88, 388
Hpy188I TCNGA 2 cut(s) 78, 213
Hpy188III TCNNGA 4 cut(s) 167, 181, 228, 380
Hpy8I GTNNAC 2 cut(s) 88, 388
Hpy99I CGWCG 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 16
HpyF3I CTNAG 2 cut(s) 155, 260
Kzo9I GATC 1 cut(s) 230
LpnPI CCDG 7 cut(s) 45, 96, 135, 208, 232, 247, 385
MaeI CTAG 2 cut(s) 51, 216
MaeIII GTNAC 1 cut(s) 53
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 2 cut(s) 35, 345
MluCI AATT 1 cut(s) 337
MlyI GAGTC 2 cut(s) 160, 404
MnlI CCTC 5 cut(s) 52, 55, 201, 283, 376
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 3 cut(s) 32, 83, 195
MspR9I CCNGG 2 cut(s) 33, 195
NciI CCSGG 2 cut(s) 33, 195
NdeI CATATG 1 cut(s) 59
NdeII GATC 1 cut(s) 230
PfeI GAWTC 2 cut(s) 79, 112
PleI GAGTC 2 cut(s) 159, 404
PpsI GAGTC 2 cut(s) 159, 404
PspPI GGNCC 1 cut(s) 351
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 317, 389
RsaNI GTAC 2 cut(s) 316, 388
Sau3AI GATC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 2 cut(s) 160, 404
ScrFI CCNGG 2 cut(s) 33, 195
SetI ASST 6 cut(s) 177, 238, 251, 374, 387, 402
SinI GGWCC 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 1 cut(s) 337
SspMI CTAG 2 cut(s) 51, 216
StyD4I CCNGG 2 cut(s) 31, 193
TaqI TCGA 1 cut(s) 47
TasI AATT 1 cut(s) 337
TfiI GAWTC 2 cut(s) 79, 112
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 85, 213
VpaK11BI GGWCC 1 cut(s) 351
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XspI CTAG 2 cut(s) 51, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.