Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004263

Physical Location & Seq

Genomic Coordinates Reverse (-)

13003568 .. 13005935

Gene Structure 2368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25434.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCAGACCAAGAGGCTCCTCTGCGTAATGGAGTAGAACACAAGATTTTCGAAGTACTTCCGTTTGTGGATGATGATTACGGTGGAGTCATCGTGGAGATGAAAACTCCTATGGATACTAAGAATTTCGTTGCAGCGCTTAGAGATTCATTCGAGCAGTGGCGCTTACAGGGTAAAAAGGGAGTCTGGTTGAACTTGCCTCTCTCACACGTAAACCTCGTGGAACCCGCGGTTAAGGAAGGTTTCCGGTATCACCATGCTGAGCCAACTTACCTGATGCTAGTTTATTGGATTCCGGAAGCCGAGAGTACTATTCCTTTGAATGCTTCCCATCGTGTTCGTGTAGGTGCTGTTGTCTTGAACCATAACAAAGAGGAAAAATACGGTTCATTATGCGGATCAGGTATCTGGAAGATCCCAACAGGAGTTGTTGACGAGGGTGAGGAGATTTTCGCCGCAGCCATTAGAGAAGTAAAAGAAGAAACAGGCATCGACACTGAGTTTTTGGAGATTCTAGCTTTCTGCCAAACCCACGAGTCATTTTTTGCAAAGTCAGATTTATTCTTCGTTTGTCTCTTGAGACCTACCTCCTTCGATATTCAAAAACAGGACTTAGAGATCGAAGCAGCTCAATGGATGCGGTTCGAGGACTCTGCCTCTCAACCTATCACACACAAGAACGATCTCTTCAAAGATATTCACCACATTTGCTCAATGAAAATGGAGAAGAGCTATAGTGGTTTTTCAAAAAAACCTATTACAACTTTCTTTGACGACAAGTTAGGTTATCTCTACTTGAATAAACAAGAAGATATGGAACAACCTATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

277

Amino Acids

31.82

Weight (kDa)

5.11

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	20 - 98	2.4e-30	Nudix hydrolase domain
NUDIX	PF00293	111 - 172	8.3e-15	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434
malus_domestica	MD03G1179300.v1.1 MD11G1198900.v1.1
prunus_persica	Prupe.4G243800_v2.0.a1
pyrus_communis	pycom03g13530 pycom11g17190
rosa_chinensis	RchiOBHm_Chr5g0051351 RchiOBHm_Chr5g0053461 RchiOBHm_Chr7g0187201
rosa_laevigata	RLG00000034884
rosa_multiflora	Rmu_sc0005966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00026990
rosa_rugosa	Rorug05G0280100
rosa_samantha	Rh5AG351300 Rh5BG363500 Rh5CG387900 Rh5DG378100 Rh7CG209600 Rh7DG086800
rosa_wichuraiana	Rw5G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	5 cut(s)	228, 230, 396, 456, 640
AclWI	GGATC	2 cut(s)	406, 409
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	2 cut(s)	57, 310
AfeI	AGCGCT	1 cut(s)	138
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	7 cut(s)	193, 322, 361, 602, 691, 747, 799
AluBI	AGCT	3 cut(s)	518, 629, 732
AluI	AGCT	3 cut(s)	518, 629, 732
Alw26I	GTCTC	2 cut(s)	574, 578
AlwI	GGATC	2 cut(s)	406, 409
Aor13HI	TCCGGA	1 cut(s)	295
Aor51HI	AGCGCT	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	134, 458, 626
ApoI	RAATTY	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	2 cut(s)	139, 165
AsuHPI	GGTGA	3 cut(s)	245, 452, 692
AsuII	TTCGAA	1 cut(s)	51
BauI	CACGAG	2 cut(s)	218, 533
BbvI	GCAGC	3 cut(s)	146, 470, 638
BccI	CCATC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciVI	GTATCC	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	574, 578
BfaI	CTAG	2 cut(s)	281, 515
BfmI	CTRYAG	1 cut(s)	733
BfoI	RGCGCY	2 cut(s)	140, 166
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	4 cut(s)	135, 456, 459, 627
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	4 cut(s)	136, 457, 460, 628
BmcAI	AGTACT	2 cut(s)	57, 310
BmiI	GGNNCC	2 cut(s)	18, 225
BmsI	GCATC	3 cut(s)	267, 498, 627
Bpu1102I	GCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	598
BsaAI	YACGTR	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	574
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	2 cut(s)	246, 295
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
BseAI	TCCGGA	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	76, 642
BseMII	CTCAG	2 cut(s)	252, 489
BseRI	GAGGAG	2 cut(s)	9, 458
BseXI	GCAGC	3 cut(s)	146, 470, 638
Bsh1236I	CGCG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	247, 296
BsmAI	GTCTC	2 cut(s)	574, 578
BsmI	GAATGC	1 cut(s)	328
Bso31I	GGTCTC	1 cut(s)	574
Bsp119I	TTCGAA	1 cut(s)	51
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	398, 414, 618, 682
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	5 cut(s)	228, 230, 396, 456, 640
BspCNI	CTCAG	2 cut(s)	253, 490
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	2 cut(s)	18, 225
BspPI	GGATC	2 cut(s)	406, 409
BspQI	GCTCTTC	1 cut(s)	722
BspT104I	TTCGAA	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	398, 414, 618, 682
BssSI	CACGAG	2 cut(s)	218, 533
Bst2BI	CACGAG	2 cut(s)	218, 533
Bst4CI	ACNGT	2 cut(s)	83, 386
Bst6I	CTCTTC	2 cut(s)	692, 722
BstBAI	YACGTR	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	51
BstDEI	CTNAG	5 cut(s)	120, 140, 261, 498, 613
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	76, 642
BstFNI	CGCG	1 cut(s)	230
BstH2I	RGCGCY	2 cut(s)	140, 166
BstHHI	GCGC	2 cut(s)	139, 165
BstKTI	GATC	4 cut(s)	401, 417, 621, 685
BstMAI	GTCTC	2 cut(s)	574, 578
BstMBI	GATC	4 cut(s)	398, 414, 618, 682
BstSFI	CTRYAG	1 cut(s)	733
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	146, 470, 638
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	76, 642
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	2 cut(s)	164, 495
CfoI	GCGC	2 cut(s)	139, 165
Cfr42I	CCGCGG	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	56, 309
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	7 cut(s)	17, 265, 302, 461, 518, 629, 732
CviKI_1	RGCY	7 cut(s)	17, 265, 302, 461, 518, 629, 732
CviQI	GTAC	2 cut(s)	56, 309
DdeI	CTNAG	5 cut(s)	120, 140, 261, 498, 613
DpnI	GATC	4 cut(s)	400, 416, 620, 684
DpnII	GATC	4 cut(s)	398, 414, 618, 682
Eam1104I	CTCTTC	2 cut(s)	692, 722
EarI	CTCTTC	2 cut(s)	692, 722
Eco31I	GGTCTC	1 cut(s)	574
Eco47III	AGCGCT	1 cut(s)	138
FaeI	CATG	1 cut(s)	260
FaiI	YATR	6 cut(s)	113, 258, 366, 394, 735, 815
FatI	CATG	1 cut(s)	256
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	135, 456, 459, 627
FokI	GGATG	2 cut(s)	83, 649
Fsp4HI	GCNGC	4 cut(s)	135, 456, 459, 627
FspBI	CTAG	2 cut(s)	281, 515
GlaI	GCGC	2 cut(s)	138, 164
GluI	GCNGC	4 cut(s)	135, 456, 459, 627
HaeII	RGCGCY	2 cut(s)	140, 166
HapII	CCGG	2 cut(s)	247, 296
HhaI	GCGC	2 cut(s)	139, 165
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	2 cut(s)	137, 163
HinP1I	GCGC	2 cut(s)	137, 163
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	7 cut(s)	87, 146, 183, 292, 511, 536, 650
HpaII	CCGG	2 cut(s)	247, 296
HphI	GGTGA	3 cut(s)	245, 452, 692
Hpy166II	GTNNAC	2 cut(s)	214, 433
Hpy188I	TCNGA	2 cut(s)	7, 556
Hpy188III	TCNNGA	4 cut(s)	296, 358, 409, 577
Hpy8I	GTNNAC	2 cut(s)	214, 433
HpyAV	CCTTC	2 cut(s)	233, 601
HpyCH4III	ACNGT	2 cut(s)	83, 386
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	134, 548
HpyF3I	CTNAG	5 cut(s)	120, 140, 261, 498, 613
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	2 cut(s)	137, 163
Kpn2I	TCCGGA	1 cut(s)	295
KspI	CCGCGG	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	398, 414, 618, 682
LguI	GCTCTTC	1 cut(s)	722
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	3 cut(s)	146, 470, 638
LweI	GCATC	3 cut(s)	267, 498, 627
MaeI	CTAG	2 cut(s)	281, 515
MaeII	ACGT	1 cut(s)	210
MalI	GATC	4 cut(s)	400, 416, 620, 684
MboI	GATC	4 cut(s)	398, 414, 618, 682
MboII	GAAGA	6 cut(s)	424, 491, 556, 679, 739, 821
MflI	RGATCY	1 cut(s)	414
MluCI	AATT	1 cut(s)	124
MlyI	GAGTC	4 cut(s)	96, 192, 545, 644
MroI	TCCGGA	1 cut(s)	295
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	2 cut(s)	234, 832
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	2 cut(s)	247, 296
Mva1269I	GAATGC	1 cut(s)	328
MvnI	CGCG	1 cut(s)	230
NdeII	GATC	4 cut(s)	398, 414, 618, 682
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	18, 225
NmeAIII	GCCGAG	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	51
PciSI	GCTCTTC	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	146, 292, 511
PkrI	GCNGC	4 cut(s)	136, 457, 460, 628
PleI	GAGTC	4 cut(s)	95, 191, 544, 644
PpsI	GAGTC	4 cut(s)	95, 191, 544, 644
Ppu21I	YACGTR	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	18, 225
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	2 cut(s)	57, 310
RsaNI	GTAC	2 cut(s)	56, 309
SacII	CCGCGG	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	722
SaqAI	TTAA	2 cut(s)	234, 832
SatI	GCNGC	4 cut(s)	135, 456, 459, 627
Sau3AI	GATC	4 cut(s)	398, 414, 618, 682
ScaI	AGTACT	2 cut(s)	57, 310
SchI	GAGTC	4 cut(s)	96, 192, 545, 644
SfaNI	GCATC	3 cut(s)	267, 498, 627
SfcI	CTRYAG	1 cut(s)	733
Sfr303I	CCGCGG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	5 cut(s)	228, 230, 396, 456, 640
SspMI	CTAG	2 cut(s)	281, 515
TaaI	ACNGT	2 cut(s)	83, 386
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	6 cut(s)	51, 153, 492, 594, 621, 645
TasI	AATT	1 cut(s)	124
TatI	WGTACW	2 cut(s)	55, 308
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	3 cut(s)	146, 292, 511
Tru1I	TTAA	2 cut(s)	234, 832
Tru9I	TTAA	2 cut(s)	234, 832
TscAI	CASTG	2 cut(s)	164, 502
TseI	GCWGC	3 cut(s)	134, 458, 626
TspDTI	ATGAA	4 cut(s)	116, 138, 378, 731
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	2 cut(s)	164, 502
XapI	RAATTY	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	2 cut(s)	281, 515
ZrmI	AGTACT	2 cut(s)	57, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.