Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004263

Physical Location & Seq

Genomic Coordinates Forward (+)

52505069 .. 52511590

Gene Structure 6522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCGGTTTCCGTGAATTCATCGGACCAGGTCTGTGAGAATGGAACTGCTGAGCTACTTCCTGCTACGAATGACGACCATGGAGGTGTTATTGTGGACATGAAGGATGCTATGGAGCCTCAGGCATTTCGTGCTTTGCTTAGAGCTTCAATAGTTCAATGGAGGCTACAGGGAAAGAAGGGAGTTTGGATAAAATTACCCATCGAACTTGTAAATCTTGTTGAAATGGTAGTTAAGGAAGGATTTCACTACCACCATGCTGAGCCACATTACCTCATGCTTGTTTATTGGATTCCTGAAACCACTAATACTATACCTGCAAATGCTTCACACCGAGTTGGTGTTGGTGCTATTATTTTGAATGATAAAAATGAGGGTGAGGATATTACTGTGGCAGCTGTAAGGGAAGTTAAAGAAGAAACAGGATGGATTTCACTCGAGGAATTCGCAGCTCAACCAGTCACCCAAAAACATGGGCTCTTCAAGTGCATCCATGAACTTTGCTTGGCAAAAGTAAAGGGGAACTATGCTGGATTTTTCCACTGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

183

Amino Acids

20.38

Weight (kDa)

5.68

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	20 - 98	7.7e-30	Nudix hydrolase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434
malus_domestica	MD03G1179300.v1.1 MD11G1198900.v1.1
prunus_persica	Prupe.4G243800_v2.0.a1
pyrus_communis	pycom03g13530 pycom11g17190
rosa_chinensis	RchiOBHm_Chr5g0051351 RchiOBHm_Chr5g0053461 RchiOBHm_Chr7g0187201
rosa_laevigata	RLG00000034884
rosa_multiflora	Rmu_sc0005966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00026990
rosa_rugosa	Rorug05G0280100
rosa_samantha	Rh5AG351300 Rh5BG363500 Rh5CG387900 Rh5DG378100 Rh7CG209600 Rh7DG086800
rosa_wichuraiana	Rw5G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AcsI	RAATTY	2 cut(s)	16, 443
AgsI	TTSAA	5 cut(s)	150, 158, 224, 361, 484
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	4 cut(s)	55, 146, 398, 452
AluI	AGCT	4 cut(s)	55, 146, 398, 452
Ama87I	CYCGRG	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	395, 449
ApoI	RAATTY	2 cut(s)	16, 443
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	389, 454
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	407, 461
BccI	CCATC	2 cut(s)	209, 420
BciT130I	CCWGG	1 cut(s)	29
BfmI	CTRYAG	2 cut(s)	167, 548
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	2 cut(s)	396, 450
BlpI	GCTNAGC	2 cut(s)	51, 261
BlsI	GCNGC	2 cut(s)	397, 451
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	97, 498
Bpu1102I	GCTNAGC	2 cut(s)	51, 261
BsaJI	CCNNGG	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	458
Bse21I	CCTNAGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	3 cut(s)	112, 431, 489
BseMII	CTCAG	3 cut(s)	42, 134, 252
BseNI	ACTGG	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	407, 461
BsiHKCI	CYCGRG	1 cut(s)	437
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp1720I	GCTNAGC	2 cut(s)	51, 261
Bsp19I	CCATGG	1 cut(s)	79
BspCNI	CTCAG	3 cut(s)	43, 133, 253
BspLI	GGNNCC	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	391, 545
Bst6I	CTCTTC	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstDEI	CTNAG	4 cut(s)	51, 120, 140, 261
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	3 cut(s)	112, 431, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	2 cut(s)	167, 548
BstV1I	GCAGC	2 cut(s)	407, 461
BstXI	CCANNNNNNTGG	1 cut(s)	473
Bsu36I	CCTNAGG	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	3 cut(s)	112, 431, 489
BtsIMutI	CAGTG	1 cut(s)	541
BveI	ACCTGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	25
CsiI	ACCWGGT	1 cut(s)	27
CviAII	CATG	6 cut(s)	80, 100, 257, 277, 473, 494
CviJI	RGCY	8 cut(s)	55, 118, 146, 166, 265, 398, 452, 478
CviKI_1	RGCY	8 cut(s)	55, 118, 146, 166, 265, 398, 452, 478
DdeI	CTNAG	4 cut(s)	51, 120, 140, 261
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	25
Eco81I	CCTNAGG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	437
EcoRI	GAATTC	2 cut(s)	16, 443
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	6 cut(s)	83, 103, 260, 280, 476, 497
FatI	CATG	6 cut(s)	79, 99, 256, 276, 472, 493
Fnu4HI	GCNGC	2 cut(s)	396, 450
FokI	GGATG	3 cut(s)	119, 438, 476
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	2 cut(s)	396, 450
GluI	GCNGC	2 cut(s)	396, 450
Hin1II	CATG	6 cut(s)	83, 103, 260, 280, 476, 497
HinfI	GANTC	1 cut(s)	292
HphI	GGTGA	2 cut(s)	389, 454
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	97, 172, 233
HpyCH4III	ACNGT	2 cut(s)	391, 545
HpyCH4V	TGCA	2 cut(s)	320, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	4 cut(s)	51, 120, 140, 261
Hsp92II	CATG	6 cut(s)	83, 103, 260, 280, 476, 497
LguI	GCTCTTC	1 cut(s)	485
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	2 cut(s)	407, 461
LweI	GCATC	2 cut(s)	97, 498
MabI	ACCWGGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	460
MboII	GAAGA	2 cut(s)	428, 472
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	3 cut(s)	16, 194, 443
MnlI	CCTC	7 cut(s)	77, 129, 156, 284, 367, 373, 433
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	2 cut(s)	234, 411
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	79
NlaIII	CATG	6 cut(s)	83, 103, 260, 280, 476, 497
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	460
PaeR7I	CTCGAG	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	292
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	397, 451
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	25
PspXI	VCTCGAGB	1 cut(s)	437
PsyI	GACNNNGTC	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	485
SaqAI	TTAA	2 cut(s)	234, 411
SatI	GCNGC	2 cut(s)	396, 450
Sau96I	GGNCC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	8 cut(s)	33, 57, 88, 148, 276, 319, 400, 454
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	97, 498
SfcI	CTRYAG	2 cut(s)	167, 548
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	25
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	3 cut(s)	16, 194, 443
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	391, 545
TaqI	TCGA	2 cut(s)	204, 438
TasI	AATT	3 cut(s)	16, 194, 443
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	234, 411
Tru9I	TTAA	2 cut(s)	234, 411
TscAI	CASTG	1 cut(s)	548
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	2 cut(s)	395, 449
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	3 cut(s)	9, 116, 510
TspRI	CASTG	1 cut(s)	548
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	2 cut(s)	16, 443
XhoI	CTCGAG	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.