Rh7CG209600

Belongs to the Nudix hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004263
Physical Location & Seq
Forward (+)
18764038 .. 18766476
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG209600.1

Sequence Viewer

Length: 327 bp
ATGACAGTGAAGATTAACCTAAGTTTACTCTTTGATAACATATCAACCCCTTGGGTAGCGCTTGAGAAACTCTTAGATGACTCGAGTATTCGCCATGGACTTGAGAGGACATGGAAGGGTGAGGATATTACTGTGGCAGCTGTAAGGGAAGTTAAAGAAGAAACAGGAATTGACGTCGAGTTTTCAGAGGTATTAGCATTCAGGCAAGCACACAAGTTATTTTTTGAGAAGTCAGATCTGTTTTTTGTGTGCATGATGCGTCCTCTATCCTTTGACATCCAAAAGCAAGACCTAGAGATTGAGGCAGCTAAGGTAAATTTTTGTTGA

Protein Analysis

108

Amino Acids

12.48

Weight (kDa)

4.87

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 39 - 104 1.1e-07 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AcsI RAATTY 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 174
AfeI AGCGCT 1 cut(s) 60
AluBI AGCT 2 cut(s) 140, 308
AluI AGCT 2 cut(s) 140, 308
Ama87I CYCGRG 1 cut(s) 82
Aor51HI AGCGCT 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 137, 305
ApoI RAATTY 1 cut(s) 316
AspLEI GCGC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 82
BbvI GCAGC 2 cut(s) 149, 317
BfaI CTAG 1 cut(s) 293
BfoI RGCGCY 1 cut(s) 62
BglII AGATCT 1 cut(s) 235
BisI GCNGC 2 cut(s) 138, 306
BlsI GCNGC 2 cut(s) 139, 307
BmeT110I CYCGRG 1 cut(s) 82
BmsI GCATC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 83, 122
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 50, 94
BseDI CCNNGG 2 cut(s) 50, 94
BseGI GGATG 1 cut(s) 276
BseXI GCAGC 2 cut(s) 149, 317
BsiHKCI CYCGRG 1 cut(s) 82
BsmI GAATGC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 82
Bsp143I GATC 1 cut(s) 235
Bsp19I CCATGG 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 50, 94
BssMI GATC 1 cut(s) 235
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 50, 94
Bst4CI ACNGT 2 cut(s) 7, 133
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 3 cut(s) 20, 73, 309
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 276
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 149, 317
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 61
CseI GACGC 1 cut(s) 248
CviAII CATG 3 cut(s) 95, 111, 253
CviJI RGCY 2 cut(s) 140, 308
CviKI_1 RGCY 2 cut(s) 140, 308
DdeI CTNAG 3 cut(s) 20, 73, 309
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eco130I CCWWGG 2 cut(s) 50, 94
Eco47III AGCGCT 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 50, 94
ErhI CCWWGG 2 cut(s) 50, 94
FaeI CATG 3 cut(s) 98, 114, 256
FaiI YATR 4 cut(s) 41, 96, 112, 254
FatI CATG 3 cut(s) 94, 110, 252
Fnu4HI GCNGC 2 cut(s) 138, 306
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 2 cut(s) 138, 306
FspBI CTAG 1 cut(s) 293
GlaI GCGC 1 cut(s) 60
GluI GCNGC 2 cut(s) 138, 306
HaeII RGCGCY 1 cut(s) 62
HgaI GACGC 1 cut(s) 248
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 3 cut(s) 98, 114, 256
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 1 cut(s) 80
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 2 cut(s) 187, 235
Hpy8I GTNNAC 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 2 cut(s) 7, 133
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 252
HpyF3I CTNAG 3 cut(s) 20, 73, 309
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 3 cut(s) 98, 114, 256
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 2 cut(s) 150, 187
Lsp1109I GCAGC 2 cut(s) 149, 317
LweI GCATC 1 cut(s) 246
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 174
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 2 cut(s) 22, 170
MflI RGATCY 1 cut(s) 235
MluCI AATT 2 cut(s) 168, 316
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 5 cut(s) 99, 115, 181, 273, 295
MseI TTAA 2 cut(s) 15, 153
MspA1I CMGCKG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 197
NcoI CCATGG 1 cut(s) 94
NdeII GATC 1 cut(s) 235
NlaIII CATG 3 cut(s) 98, 114, 256
PaeR7I CTCGAG 1 cut(s) 82
PctI GAATGC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 139, 307
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PspXI VCTCGAGB 1 cut(s) 82
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 15, 153
SatI GCNGC 2 cut(s) 138, 306
Sau3AI GATC 1 cut(s) 235
SchI GAGTC 1 cut(s) 74
SetI ASST 7 cut(s) 21, 142, 177, 192, 294, 310, 315
SfaNI GCATC 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 82
SlaI CTCGAG 1 cut(s) 82
SmlI CTYRAG 3 cut(s) 62, 82, 101
SmoI CTYRAG 3 cut(s) 62, 82, 101
Sse9I AATT 2 cut(s) 168, 316
SspMI CTAG 1 cut(s) 293
StyI CCWWGG 2 cut(s) 50, 94
TaaI ACNGT 2 cut(s) 7, 133
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 83, 177
TasI AATT 2 cut(s) 168, 316
Tru1I TTAA 2 cut(s) 15, 153
Tru9I TTAA 2 cut(s) 15, 153
TscAI CASTG 1 cut(s) 12
TseI GCWGC 2 cut(s) 137, 305
TspRI CASTG 1 cut(s) 12
XapI RAATTY 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 82
XspI CTAG 1 cut(s) 293
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.