RLG00000034884

Belongs to the Nudix hydrolase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
56515743 .. 56523302
7560 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034884

Sequence Viewer

Length: 1287 bp
ATGAAAGACCCGCAAGCTTTAAAGCCTCCATTGAAAGTCTCAACTAGAATGTCGGTTTCCGTGAATTCATCGGACCAGGTCTGTGAGAATGGAACTGTTGAGCTACTTCCTGCTACGAATGATGACCATGGAGGTGTTATTGTGGACATGAAGGATGCTATGGAGCCTCAGGCATTTCGTACTTTGCTTAGAGCTTCAATAGTTCAATGGAGGCTGCAGAGAAAGAAGGGAGTTTGGATAAAATTACCCATCGAACTTGTAAATCTTGTTGAAACGGTAGTTAAGGAAGGATTTCACTACCACCATGCTGAGCCACATTACCTCATGCTTGTTTATTGGATTCCTGAAACCACTAATACTATACCTGCAAATGCTTCACACCGAGTTGGTGTTGGTGCTATTATTTTGAATGATAAAAACGAGATGCTTGTAGTCCAGGAAAAGAGTGGCAGGTTACAAGGAACAGGTGTGTGGAAAATCCCTACCGGTATAGTTGATGAGGGTGAGGATATTACTGTGGCAGCTGTAAGGGAAGTTAAAGAAGAAACAGGAATTGACGCAGAGTTTTCAGAGGTATTAGCATTCAGGCAAGCACACAAGAAATTTTTTGAGAAGTCGGATCTGTTTTTTGTGTGCATGATGCGTCCTCTATCCTTTGACATCCAAAAGCAAGACCTAGAGATTGAGGCAGCTAAGTGGATTTCACTCGAGGAATTCGCAGCTCAACCAGTCACCCAAAAACATGGGCTCTTCAAGTGCATCCATGAGCTTTGCTTGGCAAAACTAGCTCTCTTACCAGAACCAGAAGGAGGAGGGAAAAGAATGTTTCCTCTGAAAGTCGCTGTGTTTTTCACAGCACTGAGTTTCTCAGTCTTTTCCAACCTTGTTTTCATCAAAGAGGTCTCTGGAGACGCCACACCTTCTTCTCCTAGTGGTAATTGTGTCACTTGCACTACATGTCAGTACCCATGTCCTCCTGCAGGAGGGGACCCCTTATATCCCCCACCTCCACCATCACAGACCGGAGAATACCCGCCACCGCCACCGCCTCAACAGCCAAGTCATCAAGGAAAATGCCCCCCAGCTCAGTATCAGTACCCCACCCCTCAGGGATACTCCCCTCCGGGCCCGATTCCTCAGTATCAGTACCCCACCCCTCCAGGCACCTTTGGAGGAGGAGGAGGAGGATATGTGCCTTACCCTTATAATTCGGCTTCTTCGTCTCCTTTGTCATTCTTGCTTTCAGTACTTGTGATGGTTCTGTTCTCATCTGCCGTTTTCTTTTAA

Protein Analysis

429

Amino Acids

46.97

Weight (kDa)

5.84

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nudix_hydro PF18290 36 - 114 8.6e-29 Nudix hydrolase domain
NUDIX PF00293 127 - 247 1.5e-23 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1206
Acc36I ACCTGC 2 cut(s) 373, 441
AccB1I GGYRCC 1 cut(s) 1163
AciI CCGC 4 cut(s) 11, 1034, 1040, 1046
AclWI GGATC 1 cut(s) 627
AcsI RAATTY 3 cut(s) 64, 602, 713
AcyI GRCGYC 1 cut(s) 912
AfaI GTAC 5 cut(s) 181, 965, 1097, 1148, 1248
AfiI CCNNNNNNNGG 3 cut(s) 809, 980, 983
AflIII ACRYGT 1 cut(s) 956
AgeI ACCGGT 1 cut(s) 485
AgsI TTSAA 6 cut(s) 34, 198, 206, 272, 409, 754
AjnI CCWGG 3 cut(s) 75, 435, 1159
AjuI GAANNNNNNNTTGG 2 cut(s) 872, 904
AluBI AGCT 9 cut(s) 17, 103, 194, 524, 692, 722, 769, 788, 1085
AluI AGCT 9 cut(s) 17, 103, 194, 524, 692, 722, 769, 788, 1085
Alw26I GTCTC 4 cut(s) 43, 903, 907, 1227
AlwI GGATC 1 cut(s) 627
Ama87I CYCGRG 1 cut(s) 707
AoxI GGCC 1 cut(s) 1126
ApaI GGGCCC 1 cut(s) 1130
ApeKI GCWGC 4 cut(s) 214, 521, 689, 719
ApoI RAATTY 3 cut(s) 64, 602, 713
AsiGI ACCGGT 1 cut(s) 485
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 4 cut(s) 73, 988, 1126, 1127
AsuC2I CCSGG 1 cut(s) 1125
AsuHPI GGTGA 2 cut(s) 515, 724
AvaI CYCGRG 1 cut(s) 707
AvaII GGWCC 2 cut(s) 73, 988
AxyI CCTNAGG 2 cut(s) 168, 1107
BaeGI GKGCMC 1 cut(s) 1130
BanI GGYRCC 1 cut(s) 1163
BanII GRGCYC 2 cut(s) 750, 1130
BbvI GCAGC 4 cut(s) 201, 533, 701, 731
BccI CCATC 3 cut(s) 257, 1021, 1249
BceAI ACGGC 1 cut(s) 1259
BciT130I CCWGG 3 cut(s) 77, 437, 1161
BciVI GTATCC 1 cut(s) 1106
BcnI CCSGG 1 cut(s) 1125
BcoDI GTCTC 4 cut(s) 43, 903, 907, 1227
BfaI CTAG 4 cut(s) 45, 677, 785, 930
BfmI CTRYAG 2 cut(s) 215, 978
BfuAI ACCTGC 2 cut(s) 373, 441
BfuI GTATCC 1 cut(s) 1106
BisI GCNGC 4 cut(s) 215, 522, 690, 720
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 4 cut(s) 216, 523, 691, 721
BmcAI AGTACT 1 cut(s) 1248
Bme1390I CCNGG 4 cut(s) 77, 437, 1125, 1161
Bme18I GGWCC 2 cut(s) 73, 988
BmeT110I CYCGRG 1 cut(s) 707
BmgT120I GGNCC 4 cut(s) 73, 988, 1126, 1127
BmiI GGNNCC 5 cut(s) 165, 989, 990, 1128, 1165
BmrFI CCNGG 4 cut(s) 77, 437, 1125, 1161
BmsI GCATC 4 cut(s) 145, 414, 630, 768
BpmI CTGGAG 2 cut(s) 927, 1143
Bpu1102I GCTNAGC 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 1125
BsaHI GRCGYC 1 cut(s) 912
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 2 cut(s) 485, 1022
BsaXI ACNNNNNCTCC 2 cut(s) 1176, 1206
Bsc4I CCNNNNNNNGG 3 cut(s) 809, 980, 983
Bse118I RCCGGY 1 cut(s) 485
Bse1I ACTGG 1 cut(s) 728
Bse21I CCTNAGG 2 cut(s) 168, 1107
BseBI CCWGG 3 cut(s) 77, 437, 1161
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 3 cut(s) 160, 660, 759
BseLI CCNNNNNNNGG 3 cut(s) 809, 980, 983
BseMII CTCAG 7 cut(s) 182, 300, 851, 882, 1100, 1121, 1151
BseNI ACTGG 1 cut(s) 728
BseRI GAGGAG 5 cut(s) 825, 1188, 1191, 1194, 1197
BseSI GKGCMC 1 cut(s) 1130
BseXI GCAGC 4 cut(s) 201, 533, 701, 731
BseYI CCCAGC 1 cut(s) 1081
BshFI GGCC 1 cut(s) 1128
BshNI GGYRCC 1 cut(s) 1163
BshTI ACCGGT 1 cut(s) 485
BsiHKCI CYCGRG 1 cut(s) 707
BsiSI CCGG 3 cut(s) 486, 1023, 1124
BslFI GGGAC 1 cut(s) 1001
BslI CCNNNNNNNGG 3 cut(s) 809, 980, 983
BsmAI GTCTC 4 cut(s) 43, 903, 907, 1227
BsmBI CGTCTC 2 cut(s) 903, 1227
BsmFI GGGAC 1 cut(s) 1001
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 1 cut(s) 1128
Bso31I GGTCTC 1 cut(s) 907
BsoBI CYCGRG 1 cut(s) 707
Bsp120I GGGCCC 1 cut(s) 1126
Bsp1286I GDGCHC 2 cut(s) 750, 1130
Bsp143I GATC 1 cut(s) 619
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 4 cut(s) 11, 1034, 1040, 1046
BspANI GGCC 1 cut(s) 1128
BspCNI CTCAG 7 cut(s) 181, 301, 852, 881, 1099, 1120, 1150
BspLI GGNNCC 5 cut(s) 165, 989, 990, 1128, 1165
BspMAI CTGCAG 2 cut(s) 219, 982
BspMI ACCTGC 2 cut(s) 373, 441
BspPI GGATC 1 cut(s) 627
BspQI GCTCTTC 1 cut(s) 755
BspT107I GGYRCC 1 cut(s) 1163
BspTNI GGTCTC 1 cut(s) 907
BsrFI RCCGGY 1 cut(s) 485
BsrI ACTGG 1 cut(s) 728
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 619
BssNI GRCGYC 1 cut(s) 912
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 3 cut(s) 77, 437, 1161
Bst4CI ACNGT 3 cut(s) 97, 277, 517
Bst6I CTCTTC 1 cut(s) 755
BstACI GRCGYC 1 cut(s) 912
BstC8I GCNNGC 2 cut(s) 15, 591
BstDEI CTNAG 9 cut(s) 168, 188, 309, 693, 860, 868, 1086, 1107, 1137
BstDSI CCRYGG 1 cut(s) 127
BstENI CCTNNNNNAGG 2 cut(s) 978, 981
BstF5I GGATG 3 cut(s) 160, 660, 759
BstKTI GATC 1 cut(s) 622
BstMAI GTCTC 4 cut(s) 43, 903, 907, 1227
BstMBI GATC 1 cut(s) 619
BstMWI GCNNNNNNNGC 2 cut(s) 785, 1054
BstNI CCWGG 3 cut(s) 77, 437, 1161
BstNSI RCATGY 1 cut(s) 960
BstSCI CCNGG 4 cut(s) 75, 435, 1123, 1159
BstSFI CTRYAG 2 cut(s) 215, 978
BstSLI GKGCMC 1 cut(s) 1130
BstV1I GCAGC 4 cut(s) 201, 533, 701, 731
BstX2I RGATCY 1 cut(s) 619
BstXI CCANNNNNNTGG 1 cut(s) 743
BstYI RGATCY 1 cut(s) 619
Bsu36I CCTNAGG 2 cut(s) 168, 1107
BsuI GTATCC 1 cut(s) 1106
BsuRI GGCC 1 cut(s) 1128
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 3 cut(s) 160, 660, 759
BtsIMutI CAGTG 1 cut(s) 857
BveI ACCTGC 2 cut(s) 373, 441
Cac8I GCNNGC 2 cut(s) 15, 591
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 4 cut(s) 73, 988, 1126, 1127
CseI GACGC 3 cut(s) 566, 632, 920
CsiI ACCWGGT 1 cut(s) 75
Csp6I GTAC 5 cut(s) 180, 964, 1096, 1147, 1247
CspAI ACCGGT 1 cut(s) 485
CviAII CATG 9 cut(s) 128, 148, 305, 325, 637, 743, 764, 957, 969
CviQI GTAC 5 cut(s) 180, 964, 1096, 1147, 1247
DdeI CTNAG 9 cut(s) 168, 188, 309, 693, 860, 868, 1086, 1107, 1137
DpnI GATC 1 cut(s) 621
DpnII GATC 1 cut(s) 619
DraI TTTAAA 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 755
EarI CTCTTC 1 cut(s) 755
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 2 cut(s) 750, 1130
Eco31I GGTCTC 1 cut(s) 907
Eco47I GGWCC 2 cut(s) 73, 988
Eco81I CCTNAGG 2 cut(s) 168, 1107
Eco88I CYCGRG 1 cut(s) 707
EcoNI CCTNNNNNAGG 2 cut(s) 978, 981
EcoO109I RGGNCCY 1 cut(s) 988
EcoRI GAATTC 2 cut(s) 64, 713
EcoRII CCWGG 3 cut(s) 75, 435, 1159
EcoT14I CCWWGG 1 cut(s) 127
EcoT38I GRGCYC 2 cut(s) 750, 1130
ErhI CCWWGG 1 cut(s) 127
Esp3I CGTCTC 2 cut(s) 903, 1227
FaeI CATG 9 cut(s) 131, 151, 308, 328, 640, 746, 767, 960, 972
FaqI GGGAC 1 cut(s) 1001
FatI CATG 9 cut(s) 127, 147, 304, 324, 636, 742, 763, 956, 968
FauI CCCGC 2 cut(s) 18, 1041
Fnu4HI GCNGC 4 cut(s) 215, 522, 690, 720
FokI GGATG 3 cut(s) 167, 647, 746
FriOI GRGCYC 2 cut(s) 750, 1130
Fsp4HI GCNGC 4 cut(s) 215, 522, 690, 720
FspBI CTAG 4 cut(s) 45, 677, 785, 930
GluI GCNGC 4 cut(s) 215, 522, 690, 720
GsaI CCCAGC 1 cut(s) 1085
GsuI CTGGAG 2 cut(s) 927, 1143
HaeIII GGCC 1 cut(s) 1128
HapII CCGG 3 cut(s) 486, 1023, 1124
HgaI GACGC 3 cut(s) 566, 632, 920
Hin1I GRCGYC 1 cut(s) 912
Hin1II CATG 9 cut(s) 131, 151, 308, 328, 640, 746, 767, 960, 972
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 2 cut(s) 340, 1132
HpaII CCGG 3 cut(s) 486, 1023, 1124
HphI GGTGA 2 cut(s) 515, 724
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 4 cut(s) 73, 571, 619, 834
Hpy188III TCNNGA 2 cut(s) 344, 906
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 5 cut(s) 145, 220, 281, 800, 930
HpyCH4III ACNGT 3 cut(s) 97, 277, 517
HpyCH4V TGCA 6 cut(s) 217, 368, 636, 759, 951, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 785, 1054
HpyF3I CTNAG 9 cut(s) 168, 188, 309, 693, 860, 868, 1086, 1107, 1137
Hsp92I GRCGYC 1 cut(s) 912
Hsp92II CATG 9 cut(s) 131, 151, 308, 328, 640, 746, 767, 960, 972
KflI GGGWCCC 1 cut(s) 988
Kzo9I GATC 1 cut(s) 619
LguI GCTCTTC 1 cut(s) 755
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 4 cut(s) 201, 533, 701, 731
LweI GCATC 4 cut(s) 145, 414, 630, 768
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 4 cut(s) 45, 677, 785, 930
MaeIII GTNAC 3 cut(s) 453, 730, 943
MalI GATC 1 cut(s) 621
MboI GATC 1 cut(s) 619
MboII GAAGA 4 cut(s) 554, 742, 915, 1209
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 2 cut(s) 750, 1130
MluCI AATT 7 cut(s) 64, 242, 552, 602, 713, 937, 1207
MmeI TCCRAC 2 cut(s) 597, 903
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 4 cut(s) 20, 282, 537, 1285
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 524
MspI CCGG 3 cut(s) 486, 1023, 1124
MspR9I CCNGG 4 cut(s) 77, 437, 1125, 1161
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 3 cut(s) 77, 437, 1161
MwoI GCNNNNNNNGC 2 cut(s) 785, 1054
NciI CCSGG 1 cut(s) 1125
NcoI CCATGG 1 cut(s) 127
NdeII GATC 1 cut(s) 619
NlaIII CATG 9 cut(s) 131, 151, 308, 328, 640, 746, 767, 960, 972
NlaIV GGNNCC 5 cut(s) 165, 989, 990, 1128, 1165
NmuCI GTSAC 2 cut(s) 730, 943
NspI RCATGY 1 cut(s) 960
PaeR7I CTCGAG 1 cut(s) 707
PciI ACATGT 1 cut(s) 956
PciSI GCTCTTC 1 cut(s) 755
PcsI WCGNNNNNNNCGW 1 cut(s) 1217
PctI GAATGC 1 cut(s) 581
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 340, 1132
PflFI GACNNNGTC 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 435
PinAI ACCGGT 1 cut(s) 485
PkrI GCNGC 4 cut(s) 216, 523, 691, 721
PpuMI RGGWCCY 1 cut(s) 988
PscI ACATGT 1 cut(s) 956
PsiI TTATAA 1 cut(s) 1206
Psp5II RGGWCCY 1 cut(s) 988
Psp6I CCWGG 3 cut(s) 75, 435, 1159
PspFI CCCAGC 1 cut(s) 1081
PspGI CCWGG 3 cut(s) 75, 435, 1159
PspN4I GGNNCC 5 cut(s) 165, 989, 990, 1128, 1165
PspOMI GGGCCC 1 cut(s) 1126
PspPI GGNCC 4 cut(s) 73, 988, 1126, 1127
PspPPI RGGWCCY 1 cut(s) 988
PspXI VCTCGAGB 1 cut(s) 707
PstI CTGCAG 2 cut(s) 219, 982
PsuI RGATCY 1 cut(s) 619
PsyI GACNNNGTC 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 5 cut(s) 181, 965, 1097, 1148, 1248
RsaNI GTAC 5 cut(s) 180, 964, 1096, 1147, 1247
RseI CAYNNNNRTG 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 755
SaqAI TTAA 4 cut(s) 20, 282, 537, 1285
SatI GCNGC 4 cut(s) 215, 522, 690, 720
Sau3AI GATC 1 cut(s) 619
Sau96I GGNCC 4 cut(s) 73, 988, 1126, 1127
SbfI CCTGCAGG 1 cut(s) 982
ScaI AGTACT 1 cut(s) 1248
ScrFI CCNGG 4 cut(s) 77, 437, 1125, 1161
SdaI CCTGCAGG 1 cut(s) 982
SduI GDGCHC 2 cut(s) 750, 1130
SexAI ACCWGGT 1 cut(s) 75
SfaNI GCATC 4 cut(s) 145, 414, 630, 768
SfcI CTRYAG 2 cut(s) 215, 978
Sfr274I CTCGAG 1 cut(s) 707
SinI GGWCC 2 cut(s) 73, 988
SlaI CTCGAG 1 cut(s) 707
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse8387I CCTGCAGG 1 cut(s) 982
Sse9I AATT 7 cut(s) 64, 242, 552, 602, 713, 937, 1207
SsiI CCGC 4 cut(s) 11, 1034, 1040, 1046
SspMI CTAG 4 cut(s) 45, 677, 785, 930
StyD4I CCNGG 4 cut(s) 75, 435, 1123, 1159
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 3 cut(s) 97, 277, 517
TaqI TCGA 2 cut(s) 252, 708
TasI AATT 7 cut(s) 64, 242, 552, 602, 713, 937, 1207
TatI WGTACW 1 cut(s) 1246
TfiI GAWTC 2 cut(s) 340, 1132
Tru1I TTAA 4 cut(s) 20, 282, 537, 1285
Tru9I TTAA 4 cut(s) 20, 282, 537, 1285
TscAI CASTG 1 cut(s) 864
TseFI GTSAC 2 cut(s) 730, 943
TseI GCWGC 4 cut(s) 214, 521, 689, 719
Tsp45I GTSAC 2 cut(s) 730, 943
TspDTI ATGAA 4 cut(s) 17, 57, 164, 880
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 1 cut(s) 864
Tth111I GACNNNGTC 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 73, 988
XagI CCTNNNNNAGG 2 cut(s) 978, 981
XapI RAATTY 3 cut(s) 64, 602, 713
XceI RCATGY 1 cut(s) 960
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XhoI CTCGAG 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 4 cut(s) 45, 677, 785, 930
ZrmI AGTACT 1 cut(s) 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.