Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004263

Physical Location & Seq

Genomic Coordinates Reverse (-)

56372011 .. 56377424

Gene Structure 5414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G033220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCGGTTTCCGTGAATTCATCCGACCAGGTCTGTGAGAATGGAACTGTTGAGCTACTTCCTGCTACGAATGACGACCATGGAGGTGTTATTGTGGACATGAAGGATGCTATGGAGCCTCAGGCATTTCGTACTTTGCTTAGAGCTTCAATAGTTCAATGGAGGCTACAGGGAAAGAAGGGAGTTTGGATAAAATTACCCATCGAACTTGTAAATCTTGTTGAAATGGTAGTTAAGGAAGGATTTCACTACCACCATGCTGAGCCACATTACCTCATGCTTGTTTATTGGATTCCTGAAACCACTAATACTATACCTGCAAATGCTTCACACCGAGTTGGTGTTGGTGCTATTATTTTGAATGATAAAAATGAGATGCTTGTAGTCCAGGAAAAGAGTGGCAGGTTACAAGGAACAGGTGTGTGGAAAATCCCTACTGGTATAGTTGATGAGGGTGAGGATATTACTGTAGCAGCTGTAAGGGAAGTTAAAGAAGAAACAGGAATTGACGCAGAGTTTTCAGAGGTATTAGCATTCAGGCAAGCACACAAGAAATTTTTTGAGAAGTCGGATCTGTTTTTTGTGTGCATGATGCGTCCTCTATCCTTTGACATCCAAAAGCAAGACCTAGAGATTGAGGCAGCTAAGGTAAATTTTTTGGATTTCACTCGAGGAATTGCAGCTCAACCAGTCACCCAAAAACATGGGCTCTTCAAGTGCATCCATGAGCTTTGCTTGGCAAAAGTAAAGGGGAACTATGCTGGATTTTCTCCACTGTCTATAGAATCATTTTTTGACGATAAGTTGAGTTATTTTTATTTAAATAGGCAGGATATTCAGTGCCTAACTTCTTCGGTTCAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

288

Amino Acids

32.41

Weight (kDa)

5.51

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	20 - 98	2.1e-29	Nudix hydrolase domain
NUDIX	PF00293	111 - 216	7.2e-20	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434
malus_domestica	MD03G1179300.v1.1 MD11G1198900.v1.1
prunus_persica	Prupe.4G243800_v2.0.a1
pyrus_communis	pycom03g13530 pycom11g17190
rosa_chinensis	RchiOBHm_Chr5g0051351 RchiOBHm_Chr5g0053461 RchiOBHm_Chr7g0187201
rosa_laevigata	RLG00000034884
rosa_multiflora	Rmu_sc0005966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00026990
rosa_rugosa	Rorug05G0280100
rosa_samantha	Rh5AG351300 Rh5BG363500 Rh5CG387900 Rh5DG378100 Rh7CG209600 Rh7DG086800
rosa_wichuraiana	Rw5G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	325, 393
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	3 cut(s)	16, 554, 652
AfaI	GTAC	1 cut(s)	133
AgsI	TTSAA	5 cut(s)	150, 158, 224, 361, 715
AjnI	CCWGG	2 cut(s)	27, 387
AluBI	AGCT	6 cut(s)	55, 146, 476, 644, 683, 730
AluI	AGCT	6 cut(s)	55, 146, 476, 644, 683, 730
AlwI	GGATC	1 cut(s)	579
Ama87I	CYCGRG	1 cut(s)	669
ApeKI	GCWGC	3 cut(s)	473, 641, 680
ApoI	RAATTY	3 cut(s)	16, 554, 652
Asp700I	GAANNNNTTC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	467, 685
AvaI	CYCGRG	1 cut(s)	669
AxyI	CCTNAGG	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	711
BbvI	GCAGC	3 cut(s)	485, 653, 692
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	2 cut(s)	29, 389
BfaI	CTAG	2 cut(s)	629, 865
BfmI	CTRYAG	3 cut(s)	167, 468, 780
BfuAI	ACCTGC	2 cut(s)	325, 393
BisI	GCNGC	3 cut(s)	474, 642, 681
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	3 cut(s)	475, 643, 682
Bme1390I	CCNGG	2 cut(s)	29, 389
BmeT110I	CYCGRG	1 cut(s)	669
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	29, 389
BmsI	GCATC	4 cut(s)	97, 366, 582, 729
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu1102I	GCTNAGC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	442, 689
Bse21I	CCTNAGG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	29, 389
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	4 cut(s)	20, 112, 612, 720
BseMII	CTCAG	2 cut(s)	134, 252
BseNI	ACTGG	2 cut(s)	442, 689
BseXI	GCAGC	3 cut(s)	485, 653, 692
BsiHKCI	CYCGRG	1 cut(s)	669
BsmI	GAATGC	1 cut(s)	533
BsoBI	CYCGRG	1 cut(s)	669
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	1 cut(s)	571
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	79
BspCNI	CTCAG	2 cut(s)	133, 253
BspLI	GGNNCC	1 cut(s)	117
BspMI	ACCTGC	2 cut(s)	325, 393
BspPI	GGATC	1 cut(s)	579
BspQI	GCTCTTC	1 cut(s)	716
BsrI	ACTGG	2 cut(s)	442, 689
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	29, 389
Bst4CI	ACNGT	3 cut(s)	49, 469, 777
Bst6I	CTCTTC	1 cut(s)	716
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	120, 140, 261, 645
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	4 cut(s)	20, 112, 612, 720
BstKTI	GATC	1 cut(s)	574
BstMBI	GATC	1 cut(s)	571
BstNI	CCWGG	2 cut(s)	29, 389
BstSCI	CCNGG	2 cut(s)	27, 387
BstSFI	CTRYAG	3 cut(s)	167, 468, 780
BstV1I	GCAGC	3 cut(s)	485, 653, 692
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	571
Bsu36I	CCTNAGG	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	4 cut(s)	20, 112, 612, 720
BtsIMutI	CAGTG	2 cut(s)	773, 845
BveI	ACCTGC	2 cut(s)	325, 393
Cac8I	GCNNGC	1 cut(s)	543
CseI	GACGC	2 cut(s)	518, 584
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	7 cut(s)	80, 100, 257, 277, 589, 704, 725
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	4 cut(s)	120, 140, 261, 645
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
DraI	TTTAAA	1 cut(s)	822
Eam1104I	CTCTTC	1 cut(s)	716
EarI	CTCTTC	1 cut(s)	716
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	711
Eco81I	CCTNAGG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	669
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	27, 387
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	7 cut(s)	83, 103, 260, 280, 592, 707, 728
FatI	CATG	7 cut(s)	79, 99, 256, 276, 588, 703, 724
Fnu4HI	GCNGC	3 cut(s)	474, 642, 681
FokI	GGATG	4 cut(s)	7, 119, 599, 707
FriOI	GRGCYC	1 cut(s)	711
Fsp4HI	GCNGC	3 cut(s)	474, 642, 681
FspBI	CTAG	2 cut(s)	629, 865
GluI	GCNGC	3 cut(s)	474, 642, 681
HgaI	GACGC	2 cut(s)	518, 584
Hin1II	CATG	7 cut(s)	83, 103, 260, 280, 592, 707, 728
HinfI	GANTC	2 cut(s)	292, 785
HphI	GGTGA	2 cut(s)	467, 685
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	25, 523, 571
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	97, 172, 233
HpyCH4III	ACNGT	3 cut(s)	49, 469, 777
HpyCH4V	TGCA	4 cut(s)	320, 588, 680, 720
HpyF3I	CTNAG	4 cut(s)	120, 140, 261, 645
Hsp92II	CATG	7 cut(s)	83, 103, 260, 280, 592, 707, 728
Kzo9I	GATC	1 cut(s)	571
LguI	GCTCTTC	1 cut(s)	716
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	3 cut(s)	485, 653, 692
LweI	GCATC	4 cut(s)	97, 366, 582, 729
MabI	ACCWGGT	1 cut(s)	27
MaeI	CTAG	2 cut(s)	629, 865
MaeIII	GTNAC	2 cut(s)	405, 691
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	3 cut(s)	506, 703, 843
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	6 cut(s)	16, 194, 504, 554, 652, 675
MmeI	TCCRAC	2 cut(s)	48, 549
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	3 cut(s)	234, 489, 821
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	476
MspR9I	CCNGG	2 cut(s)	29, 389
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	2 cut(s)	29, 389
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	7 cut(s)	83, 103, 260, 280, 592, 707, 728
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	691
PaeR7I	CTCGAG	1 cut(s)	669
PciSI	GCTCTTC	1 cut(s)	716
PctI	GAATGC	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	292, 785
PflFI	GACNNNGTC	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	3 cut(s)	475, 643, 682
Psp6I	CCWGG	2 cut(s)	27, 387
PspGI	CCWGG	2 cut(s)	27, 387
PspN4I	GGNNCC	1 cut(s)	117
PspXI	VCTCGAGB	1 cut(s)	669
PsuI	RGATCY	1 cut(s)	571
PsyI	GACNNNGTC	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	716
SaqAI	TTAA	3 cut(s)	234, 489, 821
SatI	GCNGC	3 cut(s)	474, 642, 681
Sau3AI	GATC	1 cut(s)	571
ScrFI	CCNGG	2 cut(s)	29, 389
SduI	GDGCHC	1 cut(s)	711
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	4 cut(s)	97, 366, 582, 729
SfcI	CTRYAG	3 cut(s)	167, 468, 780
Sfr274I	CTCGAG	1 cut(s)	669
SlaI	CTCGAG	1 cut(s)	669
SmiI	ATTTAAAT	1 cut(s)	822
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	6 cut(s)	16, 194, 504, 554, 652, 675
SspMI	CTAG	2 cut(s)	629, 865
StyD4I	CCNGG	2 cut(s)	27, 387
StyI	CCWWGG	1 cut(s)	79
SwaI	ATTTAAAT	1 cut(s)	822
TaaI	ACNGT	3 cut(s)	49, 469, 777
TaqI	TCGA	2 cut(s)	204, 670
TasI	AATT	6 cut(s)	16, 194, 504, 554, 652, 675
TfiI	GAWTC	2 cut(s)	292, 785
Tru1I	TTAA	3 cut(s)	234, 489, 821
Tru9I	TTAA	3 cut(s)	234, 489, 821
TscAI	CASTG	2 cut(s)	780, 845
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	3 cut(s)	473, 641, 680
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	2 cut(s)	9, 116
TspRI	CASTG	2 cut(s)	780, 845
Tth111I	GACNNNGTC	1 cut(s)	29
XapI	RAATTY	3 cut(s)	16, 554, 652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XhoI	CTCGAG	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	2 cut(s)	629, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.