Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004263

Physical Location & Seq

Genomic Coordinates Reverse (-)

14606538 .. 14609519

Gene Structure 2982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCCGAGTTCTGTAAATTCATCGAACCAGGTCTGTGAAAATGGTGTTGAATTACTACCTGCAATCAATGATGCCCATGGAGGAGTTATTGTAGACATGAAGGATGCTATGGACCCTCGGGACTTTCTTACGTTGCTTAGGGCATCAATCTCGCAATGGAGGGAAGAGGGAAAGAAAGGTGTTTGGATAAAATTGCCCATTGAACTCGTAAATCTTGTTGAAACTGCAGTTAAGGAGGGTTTTCGGTACCATCATGCTGAGCCGCACTACCTCATGCTTGTTTATTGGATTCCTGAAATTAATGATACTCTACCTGCAAATGCATCACACCGAGTAGGTGTTGGTGCTATTGTTTTGAATGATAAAAAAGAGATGCTTGTAGTCCAGGAAAAGAGTGGCAGGTTCCAAGGAACAGGGGTGTGGAAAATCCCAACTGGAGTCGTTGACGAGGGTGAAGATATATTTGTAGCTGTCATAAGAGAAGTCAAAGAAGAAACAGGAATCGACGCAGAATTTCTGGAGATTTTAGCATTCAGGCAAGCACACAAGGCATTCTTTGAGAAGTCGGATCTATTCTTCGTGTGCATGCTGCGTCCTCTAACCTTTGACATCCAAAAGCAAGAACTGGAGATCGAGGCAGCCAAGTGGATTCCACTTGAGGAGTTTGCAGCTCAACCAGTCACCCAGAAACATGAGCTCTTCAAGTACATTCTTGAACTTTGCTCGGCAAAATTAGACAGAGAATATGCTGGATTTTCTCCACTGCCTATAACATCAGTTTTTAACAATAAGTCGAGTTATTTGTATTTAAATAGGCAGGATATGCAGTGCCTATGTTCTTCTGATCAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

285

Amino Acids

32.24

Weight (kDa)

5.05

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434
malus_domestica	MD03G1179300.v1.1 MD11G1198900.v1.1
prunus_persica	Prupe.4G243800_v2.0.a1
pyrus_communis	pycom03g13530 pycom11g17190
rosa_chinensis	RchiOBHm_Chr5g0051351 RchiOBHm_Chr5g0053461 RchiOBHm_Chr7g0187201
rosa_laevigata	RLG00000034884
rosa_multiflora	Rmu_sc0005966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00026990
rosa_rugosa	Rorug05G0280100
rosa_samantha	Rh5AG351300 Rh5BG363500 Rh5CG387900 Rh5DG378100 Rh7CG209600 Rh7DG086800
rosa_wichuraiana	Rw5G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	67, 322, 390
Acc65I	GGTACC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	576
AcsI	RAATTY	2 cut(s)	16, 512
AfaI	GTAC	2 cut(s)	248, 707
AgsI	TTSAA	6 cut(s)	50, 203, 221, 358, 703, 716
AjnI	CCWGG	2 cut(s)	27, 384
AluBI	AGCT	3 cut(s)	470, 671, 697
AluI	AGCT	3 cut(s)	470, 671, 697
Alw21I	GWGCWC	1 cut(s)	699
AlwI	GGATC	1 cut(s)	576
Ama87I	CYCGRG	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	589, 638, 668
ApoI	RAATTY	2 cut(s)	16, 512
AseI	ATTAAT	1 cut(s)	300
Asp718I	GGTACC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	2 cut(s)	464, 673
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	3 cut(s)	576, 650, 680
BccI	CCATC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciT130I	CCWGG	2 cut(s)	29, 386
BclI	TGATCA	1 cut(s)	844
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	3 cut(s)	67, 322, 390
BisI	GCNGC	4 cut(s)	263, 590, 639, 669
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	4 cut(s)	264, 591, 640, 670
Bme1390I	CCNGG	2 cut(s)	29, 386
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	3 cut(s)	114, 248, 404
BmrFI	CCNGG	2 cut(s)	29, 386
BmsI	GCATC	5 cut(s)	61, 94, 152, 332, 363
BpmI	CTGGAG	3 cut(s)	456, 539, 647
Bpu10I	CCTNAGC	1 cut(s)	137
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	677
BsaJI	CCNNGG	3 cut(s)	76, 116, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bse1I	ACTGG	3 cut(s)	439, 630, 677
Bse3DI	GCAATG	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	29, 386
BseDI	CCNNGG	3 cut(s)	76, 116, 406
BseGI	GGATG	2 cut(s)	109, 609
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	3 cut(s)	439, 630, 677
BseRI	GAGGAG	2 cut(s)	96, 674
BseXI	GCAGC	3 cut(s)	576, 650, 680
BshNI	GGYRCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	699
BsiHKCI	CYCGRG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	2 cut(s)	530, 551
BsoBI	CYCGRG	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	3 cut(s)	568, 630, 844
Bsp1720I	GCTNAGC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	3 cut(s)	114, 248, 404
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	3 cut(s)	67, 322, 390
BspPI	GGATC	1 cut(s)	576
BspQI	GCTCTTC	1 cut(s)	704
BspT107I	GGYRCC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	161
BsrI	ACTGG	3 cut(s)	439, 630, 677
BssECI	CCNNGG	3 cut(s)	76, 116, 406
BssMI	GATC	3 cut(s)	568, 630, 844
BssT1I	CCWWGG	2 cut(s)	76, 406
Bst2UI	CCWGG	2 cut(s)	29, 386
Bst6I	CTCTTC	2 cut(s)	159, 704
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstC8I	GCNNGC	2 cut(s)	540, 587
BstDEI	CTNAG	2 cut(s)	137, 258
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	109, 609
BstKTI	GATC	3 cut(s)	571, 633, 847
BstMBI	GATC	3 cut(s)	568, 630, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	548, 823
BstNI	CCWGG	2 cut(s)	29, 386
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	27, 384
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	576, 650, 680
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	109, 609
BtsI	GCAGTG	2 cut(s)	761, 833
BtsIMutI	CAGTG	2 cut(s)	761, 833
BveI	ACCTGC	3 cut(s)	67, 322, 390
Cac8I	GCNNGC	2 cut(s)	540, 587
Cfr13I	GGNCC	1 cut(s)	112
CseI	GACGC	2 cut(s)	515, 581
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	247, 706
CviAII	CATG	6 cut(s)	77, 97, 254, 274, 586, 692
CviJI	RGCY	5 cut(s)	262, 470, 641, 671, 697
CviKI_1	RGCY	5 cut(s)	262, 470, 641, 671, 697
CviQI	GTAC	2 cut(s)	247, 706
DdeI	CTNAG	2 cut(s)	137, 258
DpnI	GATC	3 cut(s)	570, 632, 846
DpnII	GATC	3 cut(s)	568, 630, 844
DraI	TTTAAA	1 cut(s)	810
Eam1104I	CTCTTC	2 cut(s)	159, 704
EarI	CTCTTC	2 cut(s)	159, 704
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	2 cut(s)	76, 406
Eco24I	GRGCYC	1 cut(s)	699
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	697
Eco88I	CYCGRG	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	697
EcoRII	CCWGG	2 cut(s)	27, 384
EcoT14I	CCWWGG	2 cut(s)	76, 406
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	699
ErhI	CCWWGG	2 cut(s)	76, 406
FaeI	CATG	6 cut(s)	80, 100, 257, 277, 589, 695
FalI	AAGNNNNNCTT	4 cut(s)	360, 392, 539, 571
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	6 cut(s)	76, 96, 253, 273, 585, 691
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	263, 590, 639, 669
FokI	GGATG	2 cut(s)	116, 596
FriOI	GRGCYC	1 cut(s)	699
Fsp4HI	GCNGC	4 cut(s)	263, 590, 639, 669
GluI	GCNGC	4 cut(s)	263, 590, 639, 669
GsuI	CTGGAG	3 cut(s)	456, 539, 647
HgaI	GACGC	2 cut(s)	515, 581
Hin1II	CATG	6 cut(s)	80, 100, 257, 277, 589, 695
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	4 cut(s)	289, 438, 501, 649
HphI	GGTGA	2 cut(s)	464, 673
Hpy166II	GTNNAC	2 cut(s)	94, 445
Hpy188I	TCNGA	2 cut(s)	568, 844
Hpy188III	TCNNGA	4 cut(s)	119, 293, 518, 713
Hpy8I	GTNNAC	2 cut(s)	94, 445
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	7 cut(s)	62, 227, 317, 323, 585, 668, 826
HpyF10VI	GCNNNNNNNGC	2 cut(s)	548, 823
HpyF3I	CTNAG	2 cut(s)	137, 258
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	6 cut(s)	80, 100, 257, 277, 589, 695
KpnI	GGTACC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	3 cut(s)	568, 630, 844
LguI	GCTCTTC	1 cut(s)	704
Lsp1109I	GCAGC	3 cut(s)	576, 650, 680
LweI	GCATC	5 cut(s)	61, 94, 152, 332, 363
MabI	ACCWGGT	1 cut(s)	27
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	3 cut(s)	570, 632, 846
MboI	GATC	3 cut(s)	568, 630, 844
MboII	GAAGA	6 cut(s)	176, 467, 503, 568, 691, 831
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	6 cut(s)	16, 50, 191, 297, 512, 731
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	4 cut(s)	231, 300, 783, 809
MspR9I	CCNGG	2 cut(s)	29, 386
Mva1269I	GAATGC	2 cut(s)	530, 551
MvaI	CCWGG	2 cut(s)	29, 386
MwoI	GCNNNNNNNGC	2 cut(s)	548, 823
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	3 cut(s)	568, 630, 844
NlaIII	CATG	6 cut(s)	80, 100, 257, 277, 589, 695
NlaIV	GGNNCC	3 cut(s)	114, 248, 404
NmeAIII	GCCGAG	2 cut(s)	30, 704
NmuCI	GTSAC	1 cut(s)	679
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	589
PaeI	GCATGC	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	704
PctI	GAATGC	2 cut(s)	530, 551
PfeI	GAWTC	3 cut(s)	289, 501, 649
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	4 cut(s)	264, 591, 640, 670
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PshBI	ATTAAT	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	699
Psp6I	CCWGG	2 cut(s)	27, 384
PspGI	CCWGG	2 cut(s)	27, 384
PspN4I	GGNNCC	3 cut(s)	114, 248, 404
PspPI	GGNCC	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	2 cut(s)	248, 707
RsaNI	GTAC	2 cut(s)	247, 706
SacI	GAGCTC	1 cut(s)	699
SapI	GCTCTTC	1 cut(s)	704
SaqAI	TTAA	4 cut(s)	231, 300, 783, 809
SatI	GCNGC	4 cut(s)	263, 590, 639, 669
Sau3AI	GATC	3 cut(s)	568, 630, 844
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	2 cut(s)	29, 386
SduI	GDGCHC	1 cut(s)	699
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	5 cut(s)	61, 94, 152, 332, 363
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	112
SmiI	ATTTAAAT	1 cut(s)	810
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SphI	GCATGC	1 cut(s)	589
Sse9I	AATT	6 cut(s)	16, 50, 191, 297, 512, 731
SsiI	CCGC	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	2 cut(s)	27, 384
StyI	CCWWGG	2 cut(s)	76, 406
SwaI	ATTTAAAT	1 cut(s)	810
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	4 cut(s)	23, 504, 633, 794
TasI	AATT	6 cut(s)	16, 50, 191, 297, 512, 731
TatI	WGTACW	1 cut(s)	705
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	3 cut(s)	289, 501, 649
Tru1I	TTAA	4 cut(s)	231, 300, 783, 809
Tru9I	TTAA	4 cut(s)	231, 300, 783, 809
TscAI	CASTG	2 cut(s)	768, 833
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	3 cut(s)	589, 638, 668
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	2 cut(s)	9, 113
TspRI	CASTG	2 cut(s)	768, 833
VpaK11BI	GGWCC	1 cut(s)	112
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	2 cut(s)	16, 512
XceI	RCATGY	1 cut(s)	589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	93
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.