Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004263

Physical Location & Seq

Genomic Coordinates Reverse (-)

28685043 .. 28689610

Gene Structure 4568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1198900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCCGATTTCTGTAAATTCATCGGACCAGGTCTGTGAAAATGGAATTCTGCATGTTGATTTACTACCTGCAACCAATGATGCCCATGGAGGAGTTATTGTAGACATGAAGGATGCTATGGACCCTCGGGACTTCCTTACGTTGCTTAGGGCTTCAATCTCACAATGGAGGGAAGAGAGAAAGAAGGGTGTGTGGATAAAATTGCCTATTGAACTCGTAAATCTTGTCGAAACTGCAGTTAAGGAAGGTTTTCGGTACCATCATGCTGAGCCGCACTACCTCATGCTTGTTTATTGGATTCCTGAAATTGATAATACTCTGCCTGCAAATGCATCACACCGAGTGGGCATCGGTGCTATTGTTTTGAATGATAAAAAAGAGATGCTTGTAGTCCAGGAAAAGAGTGGCAGGTTCCAAGGAACAGGGGTGTGGAAAATCCCGACTGGAGTCGTTGATGAGGGTGAGGATATATTTGCGGCAGCTGTAAGAGAAATTAAAGAAGAAACAGGAATTGACGCAGAATTTCTGGAGATATTAGCATTCAGGCAAGCACACAAGGCATTCTTTGAGAAGTCGGATCTATTCTTTGTGTGCATTCTGCGTCCTCTAACCTTTGACATCCAAAAGCAAGAACTGGAGATTGAGGCAGCCAAGTGGATTCCACTCGAGGACTTTGCAGCTCAACCAGTCACCCAGAAACATGAGCTCTTCAAGTACATTCTTGAACTTTGCTTGGAAAAATTAGACAGAGAATATGCTGGATTTTCTCCACTGCCTATAACATCAGTTTTTGACCATAGGTTGAGTTATTTGTATTTAAATAGGCAGGATATGCTGTGCCTAAGTTGTTCTGATCAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

288

Amino Acids

32.77

Weight (kDa)

5.05

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	22 - 100	3.6e-30	Nudix hydrolase domain
NUDIX	PF00293	113 - 234	6.3e-25	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434
malus_domestica	MD03G1179300.v1.1 MD11G1198900.v1.1
prunus_persica	Prupe.4G243800_v2.0.a1
pyrus_communis	pycom03g13530 pycom11g17190
rosa_chinensis	RchiOBHm_Chr5g0051351 RchiOBHm_Chr5g0053461 RchiOBHm_Chr7g0187201
rosa_laevigata	RLG00000034884
rosa_multiflora	Rmu_sc0005966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00026990
rosa_rugosa	Rorug05G0280100
rosa_samantha	Rh5AG351300 Rh5BG363500 Rh5CG387900 Rh5DG378100 Rh7CG209600 Rh7DG086800
rosa_wichuraiana	Rw5G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	76, 399
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	2 cut(s)	272, 476
AclWI	GGATC	1 cut(s)	585
AcsI	RAATTY	3 cut(s)	16, 45, 521
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	2 cut(s)	257, 716
AgsI	TTSAA	5 cut(s)	156, 212, 367, 712, 725
AjnI	CCWGG	2 cut(s)	27, 393
AluBI	AGCT	3 cut(s)	482, 680, 706
AluI	AGCT	3 cut(s)	482, 680, 706
Alw21I	GWGCWC	1 cut(s)	708
AlwI	GGATC	1 cut(s)	585
Ama87I	CYCGRG	2 cut(s)	126, 665
ApeKI	GCWGC	3 cut(s)	479, 647, 677
ApoI	RAATTY	3 cut(s)	16, 45, 521
Asp700I	GAANNNNTTC	1 cut(s)	249
Asp718I	GGTACC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	25, 121
AsuHPI	GGTGA	2 cut(s)	473, 682
AvaI	CYCGRG	2 cut(s)	126, 665
AvaII	GGWCC	2 cut(s)	25, 121
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	708
BbvI	GCAGC	3 cut(s)	491, 659, 689
BccI	CCATC	1 cut(s)	267
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	2 cut(s)	29, 395
BclI	TGATCA	1 cut(s)	853
BfmI	CTRYAG	1 cut(s)	234
BfuAI	ACCTGC	2 cut(s)	76, 399
BisI	GCNGC	5 cut(s)	272, 477, 480, 648, 678
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	5 cut(s)	273, 478, 481, 649, 679
Bme1390I	CCNGG	2 cut(s)	29, 395
Bme18I	GGWCC	2 cut(s)	25, 121
BmeT110I	CYCGRG	2 cut(s)	126, 665
BmgT120I	GGNCC	2 cut(s)	25, 121
BmiI	GGNNCC	3 cut(s)	123, 257, 413
BmrFI	CCNGG	2 cut(s)	29, 395
BmsI	GCATC	5 cut(s)	70, 103, 341, 357, 372
BoxI	GACNNNNGTC	1 cut(s)	446
BpmI	CTGGAG	3 cut(s)	465, 548, 656
Bpu10I	CCTNAGC	1 cut(s)	146
Bpu1102I	GCTNAGC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	85, 125, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse1I	ACTGG	3 cut(s)	448, 639, 686
BseBI	CCWGG	2 cut(s)	29, 395
BseDI	CCNNGG	3 cut(s)	85, 125, 415
BseGI	GGATG	2 cut(s)	118, 618
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	3 cut(s)	448, 639, 686
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	3 cut(s)	491, 659, 689
BshNI	GGYRCC	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	708
BsiHKCI	CYCGRG	2 cut(s)	126, 665
BslFI	GGGAC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	3 cut(s)	539, 560, 594
BsoBI	CYCGRG	2 cut(s)	126, 665
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp143I	GATC	2 cut(s)	577, 853
Bsp1720I	GCTNAGC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	2 cut(s)	272, 476
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	123, 257, 413
BspMAI	CTGCAG	1 cut(s)	238
BspMI	ACCTGC	2 cut(s)	76, 399
BspPI	GGATC	1 cut(s)	585
BspQI	GCTCTTC	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	448, 639, 686
BssECI	CCNNGG	3 cut(s)	85, 125, 415
BssMI	GATC	2 cut(s)	577, 853
BssT1I	CCWWGG	2 cut(s)	85, 415
Bst2UI	CCWGG	2 cut(s)	29, 395
Bst6I	CTCTTC	2 cut(s)	168, 713
BstAPI	GCANNNNNTGC	1 cut(s)	832
BstC8I	GCNNGC	2 cut(s)	324, 549
BstDEI	CTNAG	3 cut(s)	146, 267, 842
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	118, 618
BstKTI	GATC	2 cut(s)	580, 856
BstMBI	GATC	2 cut(s)	577, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 832
BstNI	CCWGG	2 cut(s)	29, 395
BstNSI	RCATGY	1 cut(s)	56
BstPAI	GACNNNNGTC	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	27, 393
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	491, 659, 689
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	118, 618
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	1 cut(s)	770
BveI	ACCTGC	2 cut(s)	76, 399
Cac8I	GCNNGC	2 cut(s)	324, 549
Cfr13I	GGNCC	2 cut(s)	25, 121
CseI	GACGC	2 cut(s)	524, 590
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	256, 715
CviAII	CATG	6 cut(s)	53, 86, 106, 263, 283, 701
CviJI	RGCY	6 cut(s)	152, 271, 482, 650, 680, 706
CviKI_1	RGCY	6 cut(s)	152, 271, 482, 650, 680, 706
CviQI	GTAC	2 cut(s)	256, 715
DdeI	CTNAG	3 cut(s)	146, 267, 842
DpnI	GATC	2 cut(s)	579, 855
DpnII	GATC	2 cut(s)	577, 853
DraI	TTTAAA	1 cut(s)	819
DraIII	CACNNNGTG	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	168, 713
EarI	CTCTTC	2 cut(s)	168, 713
Ecl136II	GAGCTC	1 cut(s)	706
Eco130I	CCWWGG	2 cut(s)	85, 415
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	2 cut(s)	25, 121
Eco53kI	GAGCTC	1 cut(s)	706
Eco88I	CYCGRG	2 cut(s)	126, 665
EcoICRI	GAGCTC	1 cut(s)	706
EcoRI	GAATTC	1 cut(s)	45
EcoRII	CCWGG	2 cut(s)	27, 393
EcoT14I	CCWWGG	2 cut(s)	85, 415
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	708
ErhI	CCWWGG	2 cut(s)	85, 415
FaeI	CATG	6 cut(s)	56, 89, 109, 266, 286, 704
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 548, 580
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	6 cut(s)	52, 85, 105, 262, 282, 700
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	5 cut(s)	272, 477, 480, 648, 678
FokI	GGATG	2 cut(s)	125, 605
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	5 cut(s)	272, 477, 480, 648, 678
GluI	GCNGC	5 cut(s)	272, 477, 480, 648, 678
GsuI	CTGGAG	3 cut(s)	465, 548, 656
HgaI	GACGC	2 cut(s)	524, 590
Hin1II	CATG	6 cut(s)	56, 89, 109, 266, 286, 704
HinfI	GANTC	3 cut(s)	298, 447, 658
HphI	GGTGA	2 cut(s)	473, 682
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	25, 577, 853
Hpy188III	TCNNGA	5 cut(s)	128, 302, 439, 527, 722
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	3 cut(s)	103, 178, 239
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	7 cut(s)	52, 71, 236, 326, 332, 594, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 832
HpyF3I	CTNAG	3 cut(s)	146, 267, 842
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	6 cut(s)	56, 89, 109, 266, 286, 704
KpnI	GGTACC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	2 cut(s)	577, 853
LguI	GCTCTTC	1 cut(s)	713
Lsp1109I	GCAGC	3 cut(s)	491, 659, 689
LweI	GCATC	5 cut(s)	70, 103, 341, 357, 372
MabI	ACCWGGT	1 cut(s)	27
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	2 cut(s)	579, 855
MboI	GATC	2 cut(s)	577, 853
MboII	GAAGA	3 cut(s)	185, 512, 700
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	708
MluCI	AATT	8 cut(s)	16, 45, 200, 306, 492, 510, 521, 740
MlyI	GAGTC	1 cut(s)	456
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	9 cut(s)	83, 135, 162, 290, 451, 457, 615, 637, 661
Mph1103I	ATGCAT	1 cut(s)	334
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	3 cut(s)	240, 495, 818
MspA1I	CMGCKG	1 cut(s)	482
MspR9I	CCNGG	2 cut(s)	29, 395
Mva1269I	GAATGC	3 cut(s)	539, 560, 594
MvaI	CCWGG	2 cut(s)	29, 395
MwoI	GCNNNNNNNGC	2 cut(s)	557, 832
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	577, 853
NlaIII	CATG	6 cut(s)	56, 89, 109, 266, 286, 704
NlaIV	GGNNCC	3 cut(s)	123, 257, 413
NmuCI	GTSAC	1 cut(s)	688
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	1 cut(s)	56
PaeR7I	CTCGAG	1 cut(s)	665
PciSI	GCTCTTC	1 cut(s)	713
PctI	GAATGC	3 cut(s)	539, 560, 594
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	298, 658
PflFI	GACNNNGTC	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	5 cut(s)	273, 478, 481, 649, 679
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PshAI	GACNNNNGTC	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	708
Psp6I	CCWGG	2 cut(s)	27, 393
PspGI	CCWGG	2 cut(s)	27, 393
PspN4I	GGNNCC	3 cut(s)	123, 257, 413
PspPI	GGNCC	2 cut(s)	25, 121
PspXI	VCTCGAGB	1 cut(s)	665
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	577
PsyI	GACNNNGTC	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	257, 716
RsaNI	GTAC	2 cut(s)	256, 715
SacI	GAGCTC	1 cut(s)	708
SapI	GCTCTTC	1 cut(s)	713
SaqAI	TTAA	3 cut(s)	240, 495, 818
SatI	GCNGC	5 cut(s)	272, 477, 480, 648, 678
Sau3AI	GATC	2 cut(s)	577, 853
Sau96I	GGNCC	2 cut(s)	25, 121
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	29, 395
SduI	GDGCHC	1 cut(s)	708
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	5 cut(s)	70, 103, 341, 357, 372
SfcI	CTRYAG	1 cut(s)	234
Sfr274I	CTCGAG	1 cut(s)	665
SinI	GGWCC	2 cut(s)	25, 121
SlaI	CTCGAG	1 cut(s)	665
SmiI	ATTTAAAT	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
Sse9I	AATT	8 cut(s)	16, 45, 200, 306, 492, 510, 521, 740
SsiI	CCGC	2 cut(s)	272, 476
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	2 cut(s)	27, 393
StyI	CCWWGG	2 cut(s)	85, 415
SwaI	ATTTAAAT	1 cut(s)	819
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	228, 666
TasI	AATT	8 cut(s)	16, 45, 200, 306, 492, 510, 521, 740
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	2 cut(s)	274, 479
TfiI	GAWTC	2 cut(s)	298, 658
Tru1I	TTAA	3 cut(s)	240, 495, 818
Tru9I	TTAA	3 cut(s)	240, 495, 818
TscAI	CASTG	1 cut(s)	777
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	3 cut(s)	479, 647, 677
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	2 cut(s)	9, 122
TspRI	CASTG	1 cut(s)	777
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	25, 121
XapI	RAATTY	3 cut(s)	16, 45, 521
XceI	RCATGY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XhoI	CTCGAG	1 cut(s)	665
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.