Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004263

Physical Location & Seq

Genomic Coordinates Reverse (-)

6955598 .. 6962949

Gene Structure 7352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGTTGGCCTCAGGTTCTTCCCCTCCTGCAATTGGTGAGGATATTACTGTGGCAGCTGTAAGGGAAGTTAAAGAAGAAACAGGAATTGACGCCAAGTTTTCAGAGGTATTAGCATTCAGGCAAGCACACAAGTTATTTTTTGAGAAGTCGGATCTGTTTTTTGTGTGCATGATGCATCCTCTATCCTTTGAGATCCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

67

Amino Acids

7.48

Weight (kDa)

5.19

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	12 - 44	3.4e-07	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434
malus_domestica	MD03G1179300.v1.1 MD11G1198900.v1.1
prunus_persica	Prupe.4G243800_v2.0.a1
pyrus_communis	pycom03g13530 pycom11g17190
rosa_chinensis	RchiOBHm_Chr5g0051351 RchiOBHm_Chr5g0053461 RchiOBHm_Chr7g0187201
rosa_laevigata	RLG00000034884
rosa_multiflora	Rmu_sc0005966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00026990
rosa_rugosa	Rorug05G0280100
rosa_samantha	Rh5AG351300 Rh5BG363500 Rh5CG387900 Rh5DG378100 Rh7CG209600 Rh7DG086800
rosa_wichuraiana	Rw5G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	159, 187
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	32
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
AlwI	GGATC	2 cut(s)	159, 187
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	65
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmsI	GCATC	2 cut(s)	162, 184
BsaHI	GRCGYC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse21I	CCTNAGG	1 cut(s)	10
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	151, 192
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	23
BspPI	GGATC	2 cut(s)	159, 187
BssMI	GATC	2 cut(s)	151, 192
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	154, 195
BstMBI	GATC	2 cut(s)	151, 192
BstV1I	GCAGC	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	151, 192
BstYI	RGATCY	2 cut(s)	151, 192
Bsu36I	CCTNAGG	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	123
CseI	GACGC	1 cut(s)	98
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	2 cut(s)	8, 56
CviKI_1	RGCY	2 cut(s)	8, 56
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	2 cut(s)	153, 194
DpnII	GATC	2 cut(s)	151, 192
Eco81I	CCTNAGG	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	177
FaeI	CATG	1 cut(s)	172
FaiI	YATR	1 cut(s)	170
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	8
HgaI	GACGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	172
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	2 cut(s)	103, 151
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	29, 168, 175
HpyF3I	CTNAG	1 cut(s)	10
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	151, 192
LpnPI	CCDG	3 cut(s)	39, 66, 103
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	2 cut(s)	162, 184
MalI	GATC	2 cut(s)	153, 194
MboI	GATC	2 cut(s)	151, 192
MboII	GAAGA	2 cut(s)	9, 86
MfeI	CAATTG	1 cut(s)	30
MflI	RGATCY	2 cut(s)	151, 192
MluCI	AATT	2 cut(s)	30, 84
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	19, 31, 33, 97, 189
Mph1103I	ATGCAT	1 cut(s)	177
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	151, 192
NlaIII	CATG	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	177
PctI	GAATGC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	151, 192
PvuII	CAGCTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	151, 192
SetI	ASST	3 cut(s)	16, 58, 108
SfaNI	GCATC	2 cut(s)	162, 184
SgeI	CNNG	8 cut(s)	24, 38, 93, 106, 130, 134, 142, 181
Sse9I	AATT	2 cut(s)	30, 84
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	2 cut(s)	30, 84
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.