Rorug05G0280100

Belongs to the Nudix hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004263
Physical Location & Seq
Forward (+)
31792070 .. 31794441
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0280100.1

Sequence Viewer

Length: 399 bp
ATGCAGGCCAGTGACAGGTTCAACATCAATTCCCAGCTCGAACACCTTCAAGCTAAGTACGTCGGAACAGGGCATGCCGACTTGCATAGATATGAATGGGCTGTGAATATTCAGCGTGATAGCTATGCCTCCTATGTTGGTCATTATCCGATTCTTGCCTACTTTGCTCTTGCTGAGAATGAGTCGATTGGGAGAGAACGCTACAACTTTATGCAGGTTCGATTTACTTGCTTTGATTTTGATAGCCTTTTTTTTCAGAATGCTTTTGCCTTGCGGTCCTCCCCCAGAAAGAGAAGACGATTGAGAATGTTCTTGGTGAGTTATACATGTGATGTGGTTTTACAGTCTCGGTTTTCCAAGAAACATGTGGAGATGGATGCTGAGAGTTTTAAGTTATAA

Protein Analysis

132

Amino Acids

15.7

Weight (kDa)

9.2

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SF3b10 PF07189 5 - 72 1.7e-30 Splicing factor 3B subunit 10 (SF3b10)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 397
Acc36I ACCTGC 1 cut(s) 205
AciI CCGC 1 cut(s) 274
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 15
AflIII ACRYGT 2 cut(s) 326, 364
AgsI TTSAA 2 cut(s) 22, 50
AluBI AGCT 3 cut(s) 37, 53, 123
AluI AGCT 3 cut(s) 37, 53, 123
Alw26I GTCTC 1 cut(s) 351
AoxI GGCC 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 301
BccI CCATC 1 cut(s) 367
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BcoDI GTCTC 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BmsI GCATC 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 165, 372
BseNI ACTGG 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 33
BshFI GGCC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 1 cut(s) 8
BspACI CCGC 1 cut(s) 274
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 166, 373
BspMI ACCTGC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 6, 75
BstDEI CTNAG 3 cut(s) 54, 174, 381
BstF5I GGATG 1 cut(s) 382
BstMAI GTCTC 1 cut(s) 351
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNSI RCATGY 3 cut(s) 77, 330, 368
BstV2I GAAGAC 1 cut(s) 301
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 16
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 6, 75
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 58
CviAII CATG 3 cut(s) 74, 327, 365
CviJI RGCY 6 cut(s) 8, 37, 53, 101, 123, 246
CviKI_1 RGCY 6 cut(s) 8, 37, 53, 101, 123, 246
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 3 cut(s) 54, 174, 381
Eco47I GGWCC 1 cut(s) 276
FaeI CATG 3 cut(s) 77, 330, 368
FatI CATG 3 cut(s) 73, 326, 364
FokI GGATG 1 cut(s) 389
GsaI CCCAGC 1 cut(s) 37
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 3 cut(s) 77, 330, 368
HinfI GANTC 2 cut(s) 151, 182
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 65, 150, 258
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 4, 85, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 3 cut(s) 54, 174, 381
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 3 cut(s) 77, 330, 368
LpnPI CCDG 5 cut(s) 22, 47, 54, 200, 298
LweI GCATC 1 cut(s) 367
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 11
MboII GAAGA 1 cut(s) 306
MluCI AATT 1 cut(s) 28
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 2 cut(s) 139, 289
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 164
NlaIII CATG 3 cut(s) 77, 330, 368
NmuCI GTSAC 1 cut(s) 11
NspI RCATGY 3 cut(s) 77, 330, 368
PaeI GCATGC 1 cut(s) 77
PciI ACATGT 2 cut(s) 326, 364
PctI GAATGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 151
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PscI ACATGT 2 cut(s) 326, 364
PsiI TTATAA 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 276
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 390
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 1 cut(s) 191
SetI ASST 7 cut(s) 20, 39, 48, 55, 63, 125, 219
SfaNI GCATC 1 cut(s) 367
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 90
SphI GCATGC 1 cut(s) 77
Sse9I AATT 1 cut(s) 28
SsiI CCGC 1 cut(s) 274
SspI AATATT 1 cut(s) 109
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 39, 185, 220
TasI AATT 1 cut(s) 28
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 276
XceI RCATGY 3 cut(s) 77, 330, 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.