Rh7DG086800

Belongs to the Nudix hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004263
Physical Location & Seq
Reverse (-)
7126136 .. 7137967
11832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG086800.1

Sequence Viewer

Length: 303 bp
ATGGCCATCAAAGGCGTTGATTTCAAGTGCCCTTGGGTAGAGCTTGAGAAACTCTTAGATGACTCGAGTATTCGCCATGAACTTGAGAGGACATGGAAGGGTGAGGATATTACTGTGGCAGCTGTAAGGGAAGTTAAAGAAGAAACAGGAATTGACGCCAAGTTTTCAGAGGTATTAGCATTCAGGCAAGCACACAAATTGAGGCAGCTAAGTGGATTTCACTCAAGGAATTCGCAGCTCAACCAGTCACCCAAAAACATGGGCTCTTCAAGTGCATCCATGAGCTTTGCTTGGCAAAAGTAA

Protein Analysis

100

Amino Acids

11.38

Weight (kDa)

7.91

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 33 - 63 1.7e-06 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 229
AcyI GRCGYC 1 cut(s) 156
AgsI TTSAA 2 cut(s) 25, 270
AluBI AGCT 5 cut(s) 43, 122, 208, 238, 285
AluI AGCT 5 cut(s) 43, 122, 208, 238, 285
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 119, 205, 235
ApoI RAATTY 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 113, 240
AvaI CYCGRG 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 32
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 266
BbvI GCAGC 3 cut(s) 131, 217, 247
BccI CCATC 1 cut(s) 14
BisI GCNGC 3 cut(s) 120, 206, 236
BlsI GCNGC 3 cut(s) 121, 207, 237
BmeT110I CYCGRG 1 cut(s) 64
BmsI GCATC 1 cut(s) 284
BpuEI CTTGAG 3 cut(s) 65, 104, 208
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 244
BseSI GKGCMC 1 cut(s) 32
BseXI GCAGC 3 cut(s) 131, 217, 247
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 64
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 32, 266
BspANI GGCC 1 cut(s) 5
BspQI GCTCTTC 1 cut(s) 271
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 271
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 55, 209
BstF5I GGATG 1 cut(s) 275
BstSLI GKGCMC 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 131, 217, 247
BstXI CCANNNNNNTGG 1 cut(s) 259
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 189
CseI GACGC 1 cut(s) 164
CviAII CATG 4 cut(s) 77, 93, 259, 280
CviJI RGCY 7 cut(s) 5, 43, 122, 208, 238, 264, 285
CviKI_1 RGCY 7 cut(s) 5, 43, 122, 208, 238, 264, 285
DdeI CTNAG 2 cut(s) 55, 209
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 4 cut(s) 80, 96, 262, 283
FaiI YATR 4 cut(s) 78, 94, 260, 281
FatI CATG 4 cut(s) 76, 92, 258, 279
Fnu4HI GCNGC 3 cut(s) 120, 206, 236
FokI GGATG 1 cut(s) 262
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 3 cut(s) 120, 206, 236
GluI GCNGC 3 cut(s) 120, 206, 236
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 4 cut(s) 80, 96, 262, 283
HinfI GANTC 1 cut(s) 62
HphI GGTGA 2 cut(s) 113, 240
Hpy188I TCNGA 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 55, 209
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 4 cut(s) 80, 96, 262, 283
LguI GCTCTTC 1 cut(s) 271
LpnPI CCDG 3 cut(s) 132, 169, 257
Lsp1109I GCAGC 3 cut(s) 131, 217, 247
LweI GCATC 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 246
MboII GAAGA 2 cut(s) 152, 258
MhlI GDGCHC 2 cut(s) 32, 266
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 150, 197, 229
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 4 cut(s) 81, 97, 163, 195
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 179
NlaIII CATG 4 cut(s) 80, 96, 262, 283
NmuCI GTSAC 1 cut(s) 246
PaeR7I CTCGAG 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 271
PctI GAATGC 1 cut(s) 179
PkrI GCNGC 3 cut(s) 121, 207, 237
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PspXI VCTCGAGB 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 3 cut(s) 120, 206, 236
SchI GAGTC 1 cut(s) 56
SduI GDGCHC 2 cut(s) 32, 266
SetI ASST 6 cut(s) 45, 124, 174, 210, 240, 287
SfaNI GCATC 1 cut(s) 284
Sfr274I CTCGAG 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 64
SmlI CTYRAG 4 cut(s) 44, 64, 83, 223
SmoI CTYRAG 4 cut(s) 44, 64, 83, 223
Sse9I AATT 3 cut(s) 150, 197, 229
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 65
TasI AATT 3 cut(s) 150, 197, 229
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 3 cut(s) 119, 205, 235
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 1 cut(s) 93
XapI RAATTY 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.