Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004263

Physical Location & Seq

Genomic Coordinates Reverse (-)

57552735 .. 57556117

Gene Structure 3383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG378100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAAGGATTTCACTACCACCATGCTGAGCCACATTACCTCATGCTTGTTTATTGGATTCCTGAAACCACTAATACTATACCTGCAAATGCTTCACACCGAGTTGGTGTTGGTGCAATTATTTTGAATGATAAAAATGAGATGCTTGTAGTCCAGGAAAAGAGTGGCAGGTTACAAGGAACAGGTGTGTGGAAAATCCCTACCGGTATAGTTGATGAGGGTGAGGATATTACTGTGGCAGCTGTTAGGGAAGTTAAAGAAGAAACAGGAATTGACGCAGAGTTTTCAGAGGTATTAGCATTCAGGCAAGCACACAAGAAATTTTTTGAGAAGTCGGATCTGTTTTTTGTGTGCATGATGCGTCCTCTATCCTTTGACATCCAAAAGCAAGACCTAGAGATTGAGGCAGCTAAGTGGATTTCACTTGAGGAATTCGCAGCTCAACCAGTCACCCAAAAACATGGGCTCTTCAAGTGCATCCATGAGCTTTGCTTGGCAAAAGTAAGGGGGAACTATGCTGGATTTTCTCCACTGTCTATAGAATCATTTTTTGACGATAAGTTGAGTTATTTTTATTTAAATAGGCAGGATATTCAGTGCCTAACTTCTTCGGTTCAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

207

Amino Acids

23.58

Weight (kDa)

5.36

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	33 - 153	2.8e-24	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434
malus_domestica	MD03G1179300.v1.1 MD11G1198900.v1.1
prunus_persica	Prupe.4G243800_v2.0.a1
pyrus_communis	pycom03g13530 pycom11g17190
rosa_chinensis	RchiOBHm_Chr5g0051351 RchiOBHm_Chr5g0053461 RchiOBHm_Chr7g0187201
rosa_laevigata	RLG00000034884
rosa_multiflora	Rmu_sc0005966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00026990
rosa_rugosa	Rorug05G0280100
rosa_samantha	Rh5AG351300 Rh5BG363500 Rh5CG387900 Rh5DG378100 Rh7CG209600 Rh7DG086800
rosa_wichuraiana	Rw5G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	91, 159
AclWI	GGATC	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	320, 431
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	127, 472
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	4 cut(s)	242, 410, 440, 487
AluI	AGCT	4 cut(s)	242, 410, 440, 487
AlwI	GGATC	1 cut(s)	345
ApeKI	GCWGC	3 cut(s)	239, 407, 437
ApoI	RAATTY	2 cut(s)	320, 431
AsiGI	ACCGGT	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	233, 442
BanII	GRGCYC	1 cut(s)	468
BbvI	GCAGC	3 cut(s)	251, 419, 449
BciT130I	CCWGG	1 cut(s)	155
BfaI	CTAG	2 cut(s)	395, 622
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	2 cut(s)	91, 159
BisI	GCNGC	3 cut(s)	240, 408, 438
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	3 cut(s)	241, 409, 439
Bme1390I	CCNGG	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	3 cut(s)	132, 348, 486
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	155
BseGI	GGATG	2 cut(s)	378, 477
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	446
BseXI	GCAGC	3 cut(s)	251, 419, 449
BshTI	ACCGGT	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	337
Bsp1720I	GCTNAGC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	19
BspMI	ACCTGC	2 cut(s)	91, 159
BspPI	GGATC	1 cut(s)	345
BspQI	GCTCTTC	1 cut(s)	473
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	446
BssAI	RCCGGY	1 cut(s)	203
BssMI	GATC	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	235, 534
Bst6I	CTCTTC	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	27, 411
BstF5I	GGATG	2 cut(s)	378, 477
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	251, 419, 449
BstX2I	RGATCY	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	378, 477
BtsIMutI	CAGTG	2 cut(s)	530, 602
BveI	ACCTGC	2 cut(s)	91, 159
Cac8I	GCNNGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	203
CseI	GACGC	2 cut(s)	284, 350
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	5 cut(s)	23, 43, 355, 461, 482
CviJI	RGCY	6 cut(s)	31, 242, 410, 440, 466, 487
CviKI_1	RGCY	6 cut(s)	31, 242, 410, 440, 466, 487
DdeI	CTNAG	2 cut(s)	27, 411
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
DraI	TTTAAA	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	468
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	468
FaeI	CATG	5 cut(s)	26, 46, 358, 464, 485
FaiI	YATR	9 cut(s)	24, 44, 80, 209, 356, 462, 483, 516, 539
FatI	CATG	5 cut(s)	22, 42, 354, 460, 481
Fnu4HI	GCNGC	3 cut(s)	240, 408, 438
FokI	GGATG	2 cut(s)	365, 464
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	3 cut(s)	240, 408, 438
FspBI	CTAG	2 cut(s)	395, 622
GluI	GCNGC	3 cut(s)	240, 408, 438
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	2 cut(s)	284, 350
Hin1II	CATG	5 cut(s)	26, 46, 358, 464, 485
HinfI	GANTC	2 cut(s)	58, 542
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	2 cut(s)	233, 442
Hpy188I	TCNGA	2 cut(s)	289, 337
Hpy188III	TCNNGA	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	235, 534
HpyCH4V	TGCA	4 cut(s)	86, 116, 354, 477
HpyF3I	CTNAG	2 cut(s)	27, 411
Hsp92II	CATG	5 cut(s)	26, 46, 358, 464, 485
Kzo9I	GATC	1 cut(s)	337
LguI	GCTCTTC	1 cut(s)	473
Lsp1109I	GCAGC	3 cut(s)	251, 419, 449
LweI	GCATC	3 cut(s)	132, 348, 486
MaeI	CTAG	2 cut(s)	395, 622
MaeIII	GTNAC	2 cut(s)	171, 448
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	3 cut(s)	272, 460, 600
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	4 cut(s)	117, 270, 320, 431
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	7 cut(s)	50, 211, 217, 283, 375, 397, 421
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	255, 578
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	155
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	5 cut(s)	26, 46, 358, 464, 485
NmuCI	GTSAC	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	473
PctI	GAATGC	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	58, 542
PfoI	TCCNGGA	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	241, 409, 439
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	473
SaqAI	TTAA	2 cut(s)	255, 578
SatI	GCNGC	3 cut(s)	240, 408, 438
Sau3AI	GATC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	3 cut(s)	132, 348, 486
SfcI	CTRYAG	1 cut(s)	537
SmiI	ATTTAAAT	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	4 cut(s)	117, 270, 320, 431
SspMI	CTAG	2 cut(s)	395, 622
StyD4I	CCNGG	1 cut(s)	153
SwaI	ATTTAAAT	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	235, 534
TasI	AATT	4 cut(s)	117, 270, 320, 431
TfiI	GAWTC	2 cut(s)	58, 542
Tru1I	TTAA	2 cut(s)	255, 578
Tru9I	TTAA	2 cut(s)	255, 578
TscAI	CASTG	2 cut(s)	537, 602
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	3 cut(s)	239, 407, 437
Tsp45I	GTSAC	1 cut(s)	448
TspRI	CASTG	2 cut(s)	537, 602
XapI	RAATTY	2 cut(s)	320, 431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	2 cut(s)	395, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.