Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004263

Physical Location & Seq

Genomic Coordinates Forward (+)

16180477 .. 16188187

Gene Structure 7711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G243800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCAATTTCTGTAAATTCATCCGACCGGGTTTGTGAAAATGGAATCCAGCCTGTTGAATTACTTCCTGCAACCAATGATGTCCATGGAGGAGTTATTGTAGACATGAAGGATGCTATGGAAGCTCAACACTTTCTTACTCTGCTTAGGGCTTCAATCTCACAATGGAGGAGAGAGGGCAAGAAGGGTGTGTGGATAAAATTGCCCATTGAGCTTGTAAATCTTGTCGAAACGACAGTTAAGGAGGGGTTTCGATATCATCATGCTGAGCCACACTACCTCATGCTTGTTTATTGGATTCCTGAAACTACTAACACTCTACCTGCAAATGCTTCACACCGAGTAGGTATTGGGGCTATTGTTGTGAATGATAAAAAAGAGATGCTTGTAGTCCAGGAGAAGAGTGGCAGGTTCCAAGGAACAGGTGTGTGGAAAATCCCAACTGGAGTTGTTGACGAGGGCGAGGATATTTTTAAGGCAGCTGTAAGAGAAGTTAAAGAAGAGACAGGGATTGATGCAGAATTTTTGGAGGTATTAGCATTCAGGCAATCACACAAGACATTCTTTGAGAAGTCAGATCTATTTTTTGTGTGTATGCTGCATCCTCTAACCTTTGACATCGAAAAGCAAGAACTGGAGATTGAGGCAGCCAAGTGGATGCCACTTGAGGAGTATGCAGCTCAACCAGTCACCCAGACGCATGCACTCTTCAAGTACATTCTTGAACTGGGCTCGTTAAAATTAGACAGAGACTATGCTGGGTTTTCTCCACTGCATATAACATCAGTTTTTGACGATAAGTTGAGTTTTTTATATTTGAATAGGCAGCAGATGCAGTGCCTAAGTTCTCCTGATCAATCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0047631 GO:0048037 GO:0050662 GO:0050896 GO:0051287 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

289

Amino Acids

32.73

Weight (kDa)

5.32

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434 AT4G25434
malus_domestica	MD03G1179300.v1.1 MD11G1198900.v1.1
prunus_persica	Prupe.4G243800_v2.0.a1
pyrus_communis	pycom03g13530 pycom11g17190
rosa_chinensis	RchiOBHm_Chr5g0051351 RchiOBHm_Chr5g0053461 RchiOBHm_Chr7g0187201
rosa_laevigata	RLG00000034884
rosa_multiflora	Rmu_sc0005966.1_g000013
rosa_roxburghii	Rroxscaffold_1G00026990
rosa_rugosa	Rorug05G0280100
rosa_samantha	Rh5AG351300 Rh5BG363500 Rh5CG387900 Rh5DG378100 Rh7CG209600 Rh7DG086800
rosa_wichuraiana	Rw5G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	331, 399
AccI	GTMKAC	1 cut(s)	102
AcsI	RAATTY	2 cut(s)	16, 521
AfaI	GTAC	1 cut(s)	716
AgsI	TTSAA	5 cut(s)	59, 156, 712, 725, 820
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	4 cut(s)	125, 214, 482, 680
AluI	AGCT	4 cut(s)	125, 214, 482, 680
Alw26I	GTCTC	2 cut(s)	497, 744
ApeKI	GCWGC	5 cut(s)	479, 598, 647, 677, 826
ApoI	RAATTY	2 cut(s)	16, 521
Asp700I	GAANNNNTTC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	734
BbvI	GCAGC	5 cut(s)	491, 585, 659, 689, 838
BciT130I	CCWGG	1 cut(s)	395
BclI	TGATCA	1 cut(s)	853
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	497, 744
BfaI	CTAG	1 cut(s)	865
BfuAI	ACCTGC	2 cut(s)	331, 399
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	5 cut(s)	480, 599, 648, 678, 827
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	5 cut(s)	481, 600, 649, 679, 828
Bme1390I	CCNGG	2 cut(s)	29, 395
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	2 cut(s)	29, 395
BmrI	ACTGGG	1 cut(s)	737
BmsI	GCATC	6 cut(s)	103, 372, 505, 610, 648, 822
BmuI	ACTGGG	1 cut(s)	737
BpmI	CTGGAG	2 cut(s)	465, 656
Bpu10I	CCTNAGC	1 cut(s)	146
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	686
BpuMI	CCSGG	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	85, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse1I	ACTGG	4 cut(s)	448, 639, 686, 732
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	85, 415
BseGI	GGATG	5 cut(s)	20, 118, 601, 663, 860
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	4 cut(s)	448, 639, 686, 732
BseRI	GAGGAG	3 cut(s)	105, 184, 683
BseXI	GCAGC	5 cut(s)	491, 585, 659, 689, 838
BseYI	CCCAGC	1 cut(s)	758
Bsh1285I	CGRYCG	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	497, 744
BsmI	GAATGC	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	734
Bsp143I	GATC	2 cut(s)	577, 853
Bsp1720I	GCTNAGC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	413
BspMI	ACCTGC	2 cut(s)	331, 399
BsrI	ACTGG	4 cut(s)	448, 639, 686, 732
BssECI	CCNNGG	2 cut(s)	85, 415
BssMI	GATC	2 cut(s)	577, 853
BssT1I	CCWWGG	2 cut(s)	85, 415
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	3 cut(s)	395, 495, 713
BstAPI	GCANNNNNTGC	1 cut(s)	832
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	3 cut(s)	146, 267, 842
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	5 cut(s)	20, 118, 601, 663, 860
BstKTI	GATC	2 cut(s)	580, 856
BstMAI	GTCTC	2 cut(s)	497, 744
BstMBI	GATC	2 cut(s)	577, 853
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 211, 832
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	2 cut(s)	27, 393
BstV1I	GCAGC	5 cut(s)	491, 585, 659, 689, 838
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	5 cut(s)	20, 118, 601, 663, 860
BtsI	GCAGTG	2 cut(s)	770, 842
BtsIMutI	CAGTG	2 cut(s)	770, 842
BveI	ACCTGC	2 cut(s)	331, 399
Cac8I	GCNNGC	1 cut(s)	702
CseI	GACGC	1 cut(s)	706
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	5 cut(s)	86, 106, 263, 283, 701
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	3 cut(s)	146, 267, 842
DpnI	GATC	2 cut(s)	579, 855
DpnII	GATC	2 cut(s)	577, 853
Eam1104I	CTCTTC	3 cut(s)	395, 495, 713
EarI	CTCTTC	3 cut(s)	395, 495, 713
Eco130I	CCWWGG	2 cut(s)	85, 415
Eco24I	GRGCYC	1 cut(s)	734
Eco32I	GATATC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	393
EcoRV	GATATC	1 cut(s)	257
EcoT14I	CCWWGG	2 cut(s)	85, 415
EcoT38I	GRGCYC	1 cut(s)	734
ErhI	CCWWGG	2 cut(s)	85, 415
FaeI	CATG	5 cut(s)	89, 109, 266, 286, 704
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 548, 580
FatI	CATG	5 cut(s)	85, 105, 262, 282, 700
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	5 cut(s)	480, 599, 648, 678, 827
FokI	GGATG	5 cut(s)	7, 125, 588, 670, 847
FriOI	GRGCYC	1 cut(s)	734
Fsp4HI	GCNGC	5 cut(s)	480, 599, 648, 678, 827
FspBI	CTAG	1 cut(s)	865
GluI	GCNGC	5 cut(s)	480, 599, 648, 678, 827
GsaI	CCCAGC	1 cut(s)	762
GsuI	CTGGAG	2 cut(s)	465, 656
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	706
Hin1II	CATG	5 cut(s)	89, 109, 266, 286, 704
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	45, 298
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	2 cut(s)	103, 454
Hpy188I	TCNGA	2 cut(s)	25, 577
Hpy188III	TCNNGA	3 cut(s)	302, 722, 851
Hpy8I	GTNNAC	2 cut(s)	103, 454
HpyAV	CCTTC	2 cut(s)	103, 178
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	8 cut(s)	71, 326, 518, 601, 677, 704, 775, 835
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 211, 832
HpyF3I	CTNAG	3 cut(s)	146, 267, 842
Hsp92II	CATG	5 cut(s)	89, 109, 266, 286, 704
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	2 cut(s)	577, 853
Lsp1109I	GCAGC	5 cut(s)	491, 585, 659, 689, 838
LweI	GCATC	6 cut(s)	103, 372, 505, 610, 648, 822
MaeI	CTAG	1 cut(s)	865
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	2 cut(s)	579, 855
MboI	GATC	2 cut(s)	577, 853
MboII	GAAGA	3 cut(s)	412, 512, 700
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	734
MluCI	AATT	6 cut(s)	6, 16, 59, 200, 521, 740
MmeI	TCCRAC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	4 cut(s)	240, 474, 495, 737
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	2 cut(s)	29, 395
Mva1269I	GAATGC	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	3 cut(s)	122, 211, 832
NciI	CCSGG	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	577, 853
NlaIII	CATG	5 cut(s)	89, 109, 266, 286, 704
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	688
NspI	RCATGY	1 cut(s)	704
PaeI	GCATGC	1 cut(s)	704
PctI	GAATGC	1 cut(s)	539
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	45, 298
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	5 cut(s)	481, 600, 649, 679, 828
Psp6I	CCWGG	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
SaqAI	TTAA	4 cut(s)	240, 474, 495, 737
SatI	GCNGC	5 cut(s)	480, 599, 648, 678, 827
Sau3AI	GATC	2 cut(s)	577, 853
ScrFI	CCNGG	2 cut(s)	29, 395
SduI	GDGCHC	1 cut(s)	734
SfaNI	GCATC	6 cut(s)	103, 372, 505, 610, 648, 822
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SphI	GCATGC	1 cut(s)	704
Sse9I	AATT	6 cut(s)	6, 16, 59, 200, 521, 740
SspMI	CTAG	1 cut(s)	865
StyD4I	CCNGG	2 cut(s)	27, 393
StyI	CCWWGG	2 cut(s)	85, 415
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	228, 253, 621
TasI	AATT	6 cut(s)	6, 16, 59, 200, 521, 740
TatI	WGTACW	1 cut(s)	714
TfiI	GAWTC	2 cut(s)	45, 298
Tru1I	TTAA	4 cut(s)	240, 474, 495, 737
Tru9I	TTAA	4 cut(s)	240, 474, 495, 737
TscAI	CASTG	2 cut(s)	777, 842
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	5 cut(s)	479, 598, 647, 677, 826
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	2 cut(s)	9, 122
TspRI	CASTG	2 cut(s)	777, 842
XapI	RAATTY	2 cut(s)	16, 521
XceI	RCATGY	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.