AT4G25660

deSI-like protein At4g17486

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013336
Physical Location & Seq
Forward (+)
13083407 .. 13085596
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25660.1

Sequence Viewer

Length: 768 bp
ATGGCGGAGGTTGTTCTGCACATATACGATGTGACGAACAGTGGATCAGAGAAGACTAACAACACCATAGTTCAGATCAATAGGTTCTTCAAAGACGGGATCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATGGTCTTATGGGTATTGTGAACAAGGAACTGGTGTGTTCAGCTGTCCTAGTGGCAAGAATCCAATGTACACATATCGTGAGAAAATTGTTCTTGGGAAGACAGATTGTACAATCTTCATGGTAAATCAGATCTTGCGTGAGCTCAGCAGGGAATGGCCAGGACACACTTATGATTTGCTGTCCAAAAATTGCAATCACTTCTGCGATGTATTATGTGACCGCCTTGGTGTGCCAAAGATCCCAGGTTGGGTGAATCGTTTTGCTCATGCTGGCGACACAGCCTTGGAAGTAGCAGGAAACACAGCAATGCGGGTAAAGCAAGCCAAAACTGAACTTGTTTCAGCCAGTAAAGTGGCTTATCGCTTCCTTTCGAATGTTACCTCAAACATAACCAATGGTTCAAATGGCTCCAGTGGCTCTCCACAGCGGCCAGGAACTCTCAACAATTCAGACAATGGGAGCTTTAGATTGCAAGGTAGTTGGTTGAAAGGTATACTTAACACTGCCAAACCCTCCACAAGTACAGAGATAGGGAACAAAGAGGAAGATACAAATCATACAATCACCAATCAGAAAAAGCAGAACCGTGACTCTGATGTTCTACTATTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

255

Amino Acids

28.16

Weight (kDa)

8.17

Isoelectric Point (pI)

20.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 3 - 153 5.3e-45 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25660 AT4G25680
fragaria_vesca FvH4_7g30180
malus_domestica MD01G1207800.v1.1 MD07G1278400.v1.1
prunus_persica Prupe.2G300300_v2.0.a1
pyrus_communis pycom01g21860 pycom07g25340
rosa_chinensis RchiOBHm_Chr1g0378231
rosa_laevigata RLG00000026458
rosa_multiflora Rmu_sc0038642.1_g000003
rosa_roxburghii Rroxscaffold_4G00280630
rosa_rugosa Rorug01G0407200
rosa_samantha Rh1AG422500 Rh1BG386600 Rh1CG400200 Rh1DG417800
rosa_wichuraiana Rw1G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 646
AciI CCGC 5 cut(s) 5, 111, 373, 463, 580
AclWI GGATC 3 cut(s) 52, 107, 385
AcoI YGGCCR 2 cut(s) 308, 581
AfaI GTAC 3 cut(s) 221, 262, 676
AfeI AGCGCT 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 3 cut(s) 91, 555, 640
AjnI CCWGG 3 cut(s) 310, 394, 583
AluBI AGCT 3 cut(s) 195, 295, 615
AluI AGCT 3 cut(s) 195, 295, 615
Alw21I GWGCWC 1 cut(s) 297
AlwI GGATC 3 cut(s) 52, 107, 385
Aor51HI AGCGCT 1 cut(s) 127
AoxI GGCC 2 cut(s) 308, 581
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 415, 709
AsuII TTCGAA 1 cut(s) 524
BalI TGGCCA 1 cut(s) 310
BanII GRGCYC 1 cut(s) 297
BbsI GAAGAC 2 cut(s) 59, 257
Bbv12I GWGCWC 1 cut(s) 297
BciT130I CCWGG 3 cut(s) 312, 396, 585
BfaI CTAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 129
BglII AGATCT 1 cut(s) 282
BisI GCNGC 1 cut(s) 581
BlpI GCTNAGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 582
Bme1390I CCNGG 3 cut(s) 312, 396, 585
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 3 cut(s) 312, 396, 585
BpiI GAAGAC 2 cut(s) 59, 257
BpmI CTGGAG 1 cut(s) 547
Bpu1102I GCTNAGC 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 524
BsaBI GATNNNNATC 1 cut(s) 705
BsaJI CCNNGG 3 cut(s) 376, 394, 435
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse1I ACTGG 3 cut(s) 187, 498, 564
Bse3DI GCAATG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 3 cut(s) 312, 396, 585
BseDI CCNNGG 3 cut(s) 376, 394, 435
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 1 cut(s) 400
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 3 cut(s) 187, 498, 564
BshFI GGCC 2 cut(s) 310, 583
BsiHKAI GWGCWC 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 400
BsnI GGCC 2 cut(s) 310, 583
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 1 cut(s) 297
Bsp1407I TGTACA 2 cut(s) 219, 260
Bsp143I GATC 5 cut(s) 44, 75, 99, 282, 390
Bsp1720I GCTNAGC 1 cut(s) 296
BspACI CCGC 5 cut(s) 5, 111, 373, 463, 580
BspANI GGCC 2 cut(s) 310, 583
BspCNI CTCAG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 562
BspPI GGATC 3 cut(s) 52, 107, 385
BspT104I TTCGAA 1 cut(s) 524
BsrDI GCAATG 1 cut(s) 465
BsrGI TGTACA 2 cut(s) 219, 260
BsrI ACTGG 3 cut(s) 187, 498, 564
BssECI CCNNGG 3 cut(s) 376, 394, 435
BssMI GATC 5 cut(s) 44, 75, 99, 282, 390
BssNAI GTATAC 1 cut(s) 647
BssT1I CCWWGG 2 cut(s) 376, 435
Bst1107I GTATAC 1 cut(s) 647
Bst2UI CCWGG 3 cut(s) 312, 396, 585
Bst4CI ACNGT 2 cut(s) 41, 740
BstAUI TGTACA 2 cut(s) 219, 260
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 424, 474
BstDEI CTNAG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 5 cut(s) 47, 78, 102, 285, 393
BstMBI GATC 5 cut(s) 44, 75, 99, 282, 390
BstMWI GCNNNNNNNGC 2 cut(s) 469, 567
BstNI CCWGG 3 cut(s) 312, 396, 585
BstSCI CCNGG 3 cut(s) 310, 394, 583
BstV2I GAAGAC 2 cut(s) 59, 257
BstX2I RGATCY 2 cut(s) 282, 390
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 2 cut(s) 282, 390
BstZ17I GTATAC 1 cut(s) 647
BsuRI GGCC 2 cut(s) 310, 583
BtgZI GCGATG 1 cut(s) 372
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 3 cut(s) 46, 571, 654
Cac8I GCNNGC 2 cut(s) 424, 474
CfoI GCGC 1 cut(s) 128
Csp6I GTAC 3 cut(s) 220, 261, 675
CviAII CATG 2 cut(s) 271, 419
CviQI GTAC 3 cut(s) 220, 261, 675
DdeI CTNAG 1 cut(s) 296
DpnI GATC 5 cut(s) 46, 77, 101, 284, 392
DpnII GATC 5 cut(s) 44, 75, 99, 282, 390
EaeI YGGCCR 2 cut(s) 308, 581
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 376, 435
Eco24I GRGCYC 1 cut(s) 297
Eco47III AGCGCT 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 295
EcoRII CCWGG 3 cut(s) 310, 394, 583
EcoT14I CCWWGG 2 cut(s) 376, 435
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 2 cut(s) 376, 435
FaeI CATG 2 cut(s) 274, 422
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FatI CATG 2 cut(s) 270, 418
FauI CCCGC 1 cut(s) 456
FblI GTMKAC 1 cut(s) 646
Fnu4HI GCNGC 1 cut(s) 581
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 581
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 581
GsuI CTGGAG 1 cut(s) 547
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 310, 583
HhaI GCGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 274, 422
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 3 cut(s) 211, 406, 743
HphI GGTGA 2 cut(s) 415, 709
Hpy166II GTNNAC 3 cut(s) 173, 222, 647
Hpy188I TCNGA 6 cut(s) 49, 75, 282, 604, 726, 748
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 3 cut(s) 173, 222, 647
HpyCH4III ACNGT 2 cut(s) 41, 740
HpyCH4V TGCA 3 cut(s) 19, 345, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 469, 567
HpyF3I CTNAG 1 cut(s) 296
Hsp92II CATG 2 cut(s) 274, 422
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 5 cut(s) 44, 75, 99, 282, 390
LmnI GCTCC 2 cut(s) 566, 612
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 4 cut(s) 31, 368, 529, 740
MalI GATC 5 cut(s) 46, 77, 101, 284, 392
MboI GATC 5 cut(s) 44, 75, 99, 282, 390
MboII GAAGA 5 cut(s) 64, 79, 259, 262, 710
MflI RGATCY 2 cut(s) 282, 390
MhlI GDGCHC 1 cut(s) 297
MlsI TGGCCA 1 cut(s) 310
MluCI AATT 3 cut(s) 237, 340, 598
MluNI TGGCCA 1 cut(s) 310
MlyI GAGTC 1 cut(s) 737
MnlI CCTC 3 cut(s) 544, 676, 688
Mox20I TGGCCA 1 cut(s) 310
MscI TGGCCA 1 cut(s) 310
MseI TTAA 1 cut(s) 651
MslI CAYNNNNRTG 2 cut(s) 321, 458
Msp20I TGGCCA 1 cut(s) 310
MspA1I CMGCKG 2 cut(s) 195, 580
MspR9I CCNGG 3 cut(s) 312, 396, 585
MvaI CCWGG 3 cut(s) 312, 396, 585
MwoI GCNNNNNNNGC 2 cut(s) 469, 567
NdeII GATC 5 cut(s) 44, 75, 99, 282, 390
NlaIII CATG 2 cut(s) 274, 422
NlaIV GGNNCC 1 cut(s) 562
NmuCI GTSAC 3 cut(s) 31, 368, 740
NspV TTCGAA 1 cut(s) 524
PfeI GAWTC 2 cut(s) 211, 406
PkrI GCNGC 1 cut(s) 582
PleI GAGTC 1 cut(s) 737
PpsI GAGTC 1 cut(s) 737
Psp124BI GAGCTC 1 cut(s) 297
Psp6I CCWGG 3 cut(s) 310, 394, 583
PspGI CCWGG 3 cut(s) 310, 394, 583
PspN4I GGNNCC 1 cut(s) 562
PsuI RGATCY 2 cut(s) 282, 390
PvuII CAGCTG 1 cut(s) 195
RsaI GTAC 3 cut(s) 221, 262, 676
RsaNI GTAC 3 cut(s) 220, 261, 675
RseI CAYNNNNRTG 2 cut(s) 321, 458
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 1 cut(s) 581
Sau3AI GATC 5 cut(s) 44, 75, 99, 282, 390
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 3 cut(s) 312, 396, 585
SduI GDGCHC 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 524
SmiMI CAYNNNNRTG 2 cut(s) 321, 458
Sse9I AATT 3 cut(s) 237, 340, 598
SsiI CCGC 5 cut(s) 5, 111, 373, 463, 580
SspMI CTAG 1 cut(s) 201
SstI GAGCTC 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 310, 394, 583
StyI CCWWGG 2 cut(s) 376, 435
TaaI ACNGT 2 cut(s) 41, 740
TaqI TCGA 1 cut(s) 524
TaqII GACCGA 1 cut(s) 92
TasI AATT 3 cut(s) 237, 340, 598
TatI WGTACW 3 cut(s) 219, 260, 674
TauI GCSGC 1 cut(s) 583
TfiI GAWTC 2 cut(s) 211, 406
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 3 cut(s) 46, 571, 661
TseFI GTSAC 3 cut(s) 31, 368, 740
Tsp45I GTSAC 3 cut(s) 31, 368, 740
TspDTI ATGAA 2 cut(s) 165, 259
TspRI CASTG 3 cut(s) 46, 571, 661
XmiI GTMKAC 1 cut(s) 646
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.