Prupe.2G300300_v2.0.a1

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013336
Physical Location & Seq
Forward (+)
28889133 .. 28892729
3597 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G300300.1

Sequence Viewer

Length: 750 bp
ATGACGGAGGTGGTACTGCATATATATGACGTGACGAATAGTGGATCGGACAAAACGAACAGCACTATTCTCCAGATCAACAAGATCTTCAAGGACGGTATCGGCCTCGGCGGTATCTTCCACAGCGCCATACAGGTTTATGGAGAGGATGAATGGTCATTTGGGTTCTGTGAACAAGGATCTGGTGTTTTTAGTTGCCCTTCCGGAAAAAATCCTATGTACACCTATCGTGAATGCATCACCCTTGGAACCACAAATTGTTCAATTTTCAAGGTTAACCAAATCTTGAGGGAACTCAGTAGAGAGTGGCCTGGGTATTCATATGACCTGTTATCAAAAAACTGCAACCACTTTTGTGATGAGTTCTCTGAAAGGCTTGGGGTGCCAAAGCTTCCAGGTTGGGTTAATCGTTTTGCCCATGCTGGTGATGCTGCAATGGAAGTAGCGGGTAATACAGCAATACGGTTGAGACAAGCCAAGACAGAGATTGTATCTGCTAGCAAAGTGGCATATCGTTTCCTTGCCGGTGTTACTAACAACGCCATTGCTGCTCCTGAGTCTCCTGGAAATTCAACCAGAGGCACTCCTAGATTTCAAGCAGCTTGGTTTAAAAACCTAATCACTACAGGAGCAAAACCATCCAGTAGTACAGAAATTGAGAATAAGGAAGAGGATGTACTTCGGCACCACCAGCAATCAGATGCAGAGTCGCCGCCGCGGCAGAAATCATATACATGGCGTACCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

250

Amino Acids

27.63

Weight (kDa)

7.0

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25660 AT4G25680
fragaria_vesca FvH4_7g30180
malus_domestica MD01G1207800.v1.1 MD07G1278400.v1.1
prunus_persica Prupe.2G300300_v2.0.a1
pyrus_communis pycom01g21860 pycom07g25340
rosa_chinensis RchiOBHm_Chr1g0378231
rosa_laevigata RLG00000026458
rosa_multiflora Rmu_sc0038642.1_g000003
rosa_roxburghii Rroxscaffold_4G00280630
rosa_rugosa Rorug01G0407200
rosa_samantha Rh1AG422500 Rh1BG386600 Rh1CG400200 Rh1DG417800
rosa_wichuraiana Rw1G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 382, 684
AccII CGCG 1 cut(s) 718
AccIII TCCGGA 1 cut(s) 203
AciI CCGC 5 cut(s) 111, 446, 713, 716, 718
AclWI GGATC 2 cut(s) 52, 187
AcsI RAATTY 1 cut(s) 568
AfaI GTAC 5 cut(s) 15, 221, 649, 678, 742
AgsI TTSAA 5 cut(s) 91, 264, 271, 573, 596
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 3 cut(s) 310, 394, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 2 cut(s) 391, 602
AluI AGCT 2 cut(s) 391, 602
Alw26I GTCTC 2 cut(s) 463, 564
AlwI GGATC 2 cut(s) 52, 187
Aor13HI TCCGGA 1 cut(s) 203
AoxI GGCC 2 cut(s) 103, 308
ApeKI GCWGC 3 cut(s) 431, 548, 599
ApoI RAATTY 1 cut(s) 568
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 232, 437
AsuNHI GCTAGC 1 cut(s) 497
BanI GGYRCC 2 cut(s) 382, 684
BarI GAAGNNNNNNTAC 2 cut(s) 660, 692
BbvI GCAGC 3 cut(s) 418, 535, 611
BccI CCATC 1 cut(s) 646
BciT130I CCWGG 3 cut(s) 312, 396, 564
BcoDI GTCTC 2 cut(s) 463, 564
BfaI CTAG 2 cut(s) 498, 588
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 718
BglII AGATCT 1 cut(s) 84
BisI GCNGC 6 cut(s) 432, 549, 600, 713, 716, 719
BlsI GCNGC 6 cut(s) 433, 550, 601, 714, 717, 720
Bme1390I CCNGG 3 cut(s) 312, 396, 564
BmgBI CACGTC 1 cut(s) 31
BmiI GGNNCC 3 cut(s) 250, 384, 686
BmrFI CCNGG 3 cut(s) 312, 396, 564
BmsI GCATC 3 cut(s) 246, 418, 691
BmtI GCTAGC 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 307
BsaJI CCNNGG 4 cut(s) 106, 244, 311, 716
BsaWI WCCGGW 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 524
Bse1I ACTGG 1 cut(s) 642
Bse3DI GCAATG 2 cut(s) 441, 543
BseAI TCCGGA 1 cut(s) 203
BseBI CCWGG 3 cut(s) 312, 396, 564
BseDI CCNNGG 4 cut(s) 106, 244, 311, 716
BseGI GGATG 3 cut(s) 154, 638, 679
BseMI GCAATG 2 cut(s) 441, 543
BseMII CTCAG 2 cut(s) 310, 546
BseNI ACTGG 1 cut(s) 642
BseXI GCAGC 3 cut(s) 418, 535, 611
Bsh1236I CGCG 1 cut(s) 718
BshFI GGCC 2 cut(s) 105, 310
BshNI GGYRCC 2 cut(s) 382, 684
BsiSI CCGG 2 cut(s) 204, 525
BsmAI GTCTC 2 cut(s) 463, 564
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 2 cut(s) 105, 310
Bsp13I TCCGGA 1 cut(s) 203
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 4 cut(s) 44, 75, 84, 179
BspACI CCGC 5 cut(s) 111, 446, 713, 716, 718
BspANI GGCC 2 cut(s) 105, 310
BspCNI CTCAG 2 cut(s) 309, 547
BspEI TCCGGA 1 cut(s) 203
BspFNI CGCG 1 cut(s) 718
BspLI GGNNCC 3 cut(s) 250, 384, 686
BspOI GCTAGC 1 cut(s) 501
BspPI GGATC 2 cut(s) 52, 187
BspT107I GGYRCC 2 cut(s) 382, 684
BsrDI GCAATG 2 cut(s) 441, 543
BsrFI RCCGGY 1 cut(s) 524
BsrGI TGTACA 1 cut(s) 219
BsrI ACTGG 1 cut(s) 642
BssAI RCCGGY 1 cut(s) 524
BssECI CCNNGG 4 cut(s) 106, 244, 311, 716
BssMI GATC 4 cut(s) 44, 75, 84, 179
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 3 cut(s) 312, 396, 564
Bst4CI ACNGT 2 cut(s) 98, 465
Bst6I CTCTTC 1 cut(s) 663
BstAUI TGTACA 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 499
BstDEI CTNAG 2 cut(s) 296, 555
BstDSI CCRYGG 1 cut(s) 716
BstF5I GGATG 3 cut(s) 154, 638, 679
BstFNI CGCG 1 cut(s) 718
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 4 cut(s) 47, 78, 87, 182
BstMAI GTCTC 2 cut(s) 463, 564
BstMBI GATC 4 cut(s) 44, 75, 84, 179
BstMWI GCNNNNNNNGC 5 cut(s) 382, 428, 548, 691, 718
BstNI CCWGG 3 cut(s) 312, 396, 564
BstSCI CCNGG 3 cut(s) 310, 394, 562
BstSFI CTRYAG 1 cut(s) 624
BstUI CGCG 1 cut(s) 718
BstV1I GCAGC 3 cut(s) 418, 535, 611
BstX2I RGATCY 2 cut(s) 84, 179
BstYI RGATCY 2 cut(s) 84, 179
BsuRI GGCC 2 cut(s) 105, 310
BtgI CCRYGG 1 cut(s) 716
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 3 cut(s) 154, 638, 679
Cac8I GCNNGC 1 cut(s) 499
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 524
Cfr42I CCGCGG 1 cut(s) 719
Csp6I GTAC 5 cut(s) 14, 220, 648, 677, 741
CviAII CATG 2 cut(s) 419, 735
CviJI RGCY 6 cut(s) 105, 310, 376, 391, 476, 602
CviKI_1 RGCY 6 cut(s) 105, 310, 376, 391, 476, 602
CviQI GTAC 5 cut(s) 14, 220, 648, 677, 741
DdeI CTNAG 2 cut(s) 296, 555
DpnI GATC 4 cut(s) 46, 77, 86, 181
DpnII GATC 4 cut(s) 44, 75, 84, 179
DraI TTTAAA 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco130I CCWWGG 1 cut(s) 244
EcoRII CCWGG 3 cut(s) 310, 394, 562
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 2 cut(s) 422, 738
FatI CATG 2 cut(s) 418, 734
FauI CCCGC 1 cut(s) 439
FauNDI CATATG 1 cut(s) 322
Fnu4HI GCNGC 6 cut(s) 432, 549, 600, 713, 716, 719
FokI GGATG 3 cut(s) 161, 625, 686
Fsp4HI GCNGC 6 cut(s) 432, 549, 600, 713, 716, 719
FspBI CTAG 2 cut(s) 498, 588
GlaI GCGC 1 cut(s) 127
GluI GCNGC 6 cut(s) 432, 549, 600, 713, 716, 719
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 105, 310
HapII CCGG 2 cut(s) 204, 525
HhaI GCGC 1 cut(s) 128
Hin1II CATG 2 cut(s) 422, 738
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 2 cut(s) 557, 707
HpaI GTTAAC 1 cut(s) 277
HpaII CCGG 2 cut(s) 204, 525
HphI GGTGA 2 cut(s) 232, 437
Hpy166II GTNNAC 3 cut(s) 173, 222, 277
Hpy188I TCNGA 3 cut(s) 49, 370, 700
Hpy188III TCNNGA 5 cut(s) 73, 204, 230, 286, 554
Hpy8I GTNNAC 3 cut(s) 173, 222, 277
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 2 cut(s) 98, 465
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 5 cut(s) 19, 237, 345, 434, 704
HpyF10VI GCNNNNNNNGC 5 cut(s) 382, 428, 548, 691, 718
HpyF3I CTNAG 2 cut(s) 296, 555
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 422, 738
HspAI GCGC 1 cut(s) 126
Kpn2I TCCGGA 1 cut(s) 203
KspAI GTTAAC 1 cut(s) 277
KspI CCGCGG 1 cut(s) 719
Kzo9I GATC 4 cut(s) 44, 75, 84, 179
LmnI GCTCC 2 cut(s) 556, 629
Lsp1109I GCAGC 3 cut(s) 418, 535, 611
LweI GCATC 3 cut(s) 246, 418, 691
MaeI CTAG 2 cut(s) 498, 588
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 31, 529
MalI GATC 4 cut(s) 46, 77, 86, 181
MboI GATC 4 cut(s) 44, 75, 84, 179
MboII GAAGA 3 cut(s) 79, 109, 680
MflI RGATCY 2 cut(s) 84, 179
MluCI AATT 4 cut(s) 256, 264, 568, 654
MlyI GAGTC 2 cut(s) 566, 716
MnlI CCTC 5 cut(s) 116, 139, 282, 572, 664
Mph1103I ATGCAT 1 cut(s) 239
MroI TCCGGA 1 cut(s) 203
MseI TTAA 3 cut(s) 276, 405, 609
MslI CAYNNNNRTG 4 cut(s) 24, 354, 423, 733
MspA1I CMGCKG 1 cut(s) 718
MspI CCGG 2 cut(s) 204, 525
MspR9I CCNGG 3 cut(s) 312, 396, 564
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 3 cut(s) 312, 396, 564
MvnI CGCG 1 cut(s) 718
MwoI GCNNNNNNNGC 5 cut(s) 382, 428, 548, 691, 718
NdeI CATATG 1 cut(s) 322
NdeII GATC 4 cut(s) 44, 75, 84, 179
NheI GCTAGC 1 cut(s) 497
NlaIII CATG 2 cut(s) 422, 738
NlaIV GGNNCC 3 cut(s) 250, 384, 686
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 239
OliI CACNNNNGTG 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PctI GAATGC 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 562
PkrI GCNGC 6 cut(s) 433, 550, 601, 714, 717, 720
PleI GAGTC 2 cut(s) 565, 715
PpsI GAGTC 2 cut(s) 565, 715
Psp6I CCWGG 3 cut(s) 310, 394, 562
PspGI CCWGG 3 cut(s) 310, 394, 562
PspN4I GGNNCC 3 cut(s) 250, 384, 686
PsuI RGATCY 2 cut(s) 84, 179
RsaI GTAC 5 cut(s) 15, 221, 649, 678, 742
RsaNI GTAC 5 cut(s) 14, 220, 648, 677, 741
RseI CAYNNNNRTG 4 cut(s) 24, 354, 423, 733
SacII CCGCGG 1 cut(s) 719
SaqAI TTAA 3 cut(s) 276, 405, 609
SatI GCNGC 6 cut(s) 432, 549, 600, 713, 716, 719
Sau3AI GATC 4 cut(s) 44, 75, 84, 179
SchI GAGTC 2 cut(s) 566, 716
ScrFI CCNGG 3 cut(s) 312, 396, 564
SfaNI GCATC 3 cut(s) 246, 418, 691
SfcI CTRYAG 1 cut(s) 624
Sfr303I CCGCGG 1 cut(s) 719
SgrBI CCGCGG 1 cut(s) 719
SmiMI CAYNNNNRTG 4 cut(s) 24, 354, 423, 733
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 4 cut(s) 256, 264, 568, 654
SsiI CCGC 5 cut(s) 111, 446, 713, 716, 718
SspMI CTAG 2 cut(s) 498, 588
StyD4I CCNGG 3 cut(s) 310, 394, 562
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 98, 465
TaiI ACGT 1 cut(s) 33
TasI AATT 4 cut(s) 256, 264, 568, 654
TatI WGTACW 3 cut(s) 219, 647, 676
TauI GCSGC 3 cut(s) 715, 718, 721
Tru1I TTAA 3 cut(s) 276, 405, 609
Tru9I TTAA 3 cut(s) 276, 405, 609
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 3 cut(s) 431, 548, 599
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 165, 309
TspGWI ACGGA 1 cut(s) 20
XapI RAATTY 1 cut(s) 568
XspI CTAG 2 cut(s) 498, 588
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.