MD01G1207800.v1.1

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0013336
Physical Location & Seq
Forward (+)
30274425 .. 30277103
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1207800.v1.1.491

Sequence Viewer

Length: 747 bp
ATGGCGGAGGTGGTGCTGCATATATACGATGTGACGAATAGTGGATCGGACAAGACGAATAGCACCATTCTGCAGATCAACAAGATCTTCAAGGACGGTATCGGCCTCGGCGGCATCTTCCACAGCGCCGTTCAGGTTTATGGAGACGATGAATGGTCATTTGGGTTCTGTGAACAAGGATCTGGTGTGTTTAGTTGCCCTTCTGGGAAAAATCCAATGTACACATATCGTGAAAGCATTGTTCTTGGGACAACGCATTGTTCGATCTTCAAGGTTAACCAAATCTTGAGGGAACTGAGTAGAGAGTGGCCAGGGTATTCGTATGACCTGTTATCAAAAAACTGCAATCACTTTTGTGATGAGTTATGTGAAAGGCTTGGGGTGCCAAAGCTTCCAGGTTGGGTTAATCGTTTTGCCCATGCTGGTGATGCTGCTATGGAAGTCGCAGGAAACACGGCAGAACGGTTTAGACAAGCGAAGACAGAGATTGTTTCAGCTAGCAAAGTAGCGTATCGTTTCCTTGTGGGTGTTACAAGCAATGCCATAGCTTCTCCCGCGTCTCCTGAAAATTCAGACACAGGTACTCCTAGATTTCAGGCCGCATGGTTTAAGAATCTAATCACAACGGGAGCAAAGCCTTCTAGTAGTTCAGATTTCGAGAACAAGGAAGAAGATGTTCGGCAGAACCAGCAACCGCATGAAGAGCCGCCGCTGCAGCAGAATTCTCGAACATGGCAAAGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

249

Amino Acids

27.49

Weight (kDa)

5.71

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 3 - 149 7.4e-43 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25660 AT4G25680
fragaria_vesca FvH4_7g30180
malus_domestica MD01G1207800.v1.1 MD07G1278400.v1.1
prunus_persica Prupe.2G300300_v2.0.a1
pyrus_communis pycom01g21860 pycom07g25340
rosa_chinensis RchiOBHm_Chr1g0378231
rosa_laevigata RLG00000026458
rosa_multiflora Rmu_sc0038642.1_g000003
rosa_roxburghii Rroxscaffold_4G00280630
rosa_rugosa Rorug01G0407200
rosa_samantha Rh1AG422500 Rh1BG386600 Rh1CG400200 Rh1DG417800
rosa_wichuraiana Rw1G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 382
AccII CGCG 1 cut(s) 557
AciI CCGC 7 cut(s) 5, 111, 555, 600, 695, 707, 710
AclWI GGATC 2 cut(s) 52, 187
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 2 cut(s) 568, 721
AfaI GTAC 3 cut(s) 221, 583, 742
AgsI TTSAA 2 cut(s) 91, 271
AjnI CCWGG 2 cut(s) 310, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 3 cut(s) 391, 497, 548
AluI AGCT 3 cut(s) 391, 497, 548
Alw26I GTCTC 2 cut(s) 138, 564
AlwI GGATC 2 cut(s) 52, 187
AoxI GGCC 3 cut(s) 103, 308, 597
ApeKI GCWGC 4 cut(s) 16, 431, 712, 715
ApoI RAATTY 2 cut(s) 568, 721
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 497
BalI TGGCCA 1 cut(s) 310
BanI GGYRCC 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 485
BbvI GCAGC 4 cut(s) 3, 418, 699, 727
BceAI ACGGC 2 cut(s) 113, 471
BcgI CGANNNNNNTGC 2 cut(s) 707, 741
BciT130I CCWGG 2 cut(s) 312, 396
BcoDI GTCTC 2 cut(s) 138, 564
BfaI CTAG 3 cut(s) 498, 588, 642
BfmI CTRYAG 2 cut(s) 71, 713
BfoI RGCGCY 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 111
BglII AGATCT 1 cut(s) 84
BisI GCNGC 8 cut(s) 17, 112, 432, 600, 707, 710, 713, 716
BlsI GCNGC 8 cut(s) 18, 113, 433, 601, 708, 711, 714, 717
Bme1390I CCNGG 2 cut(s) 312, 396
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 2 cut(s) 312, 396
BmsI GCATC 2 cut(s) 123, 418
BmtI GCTAGC 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 307
BsaAI YACGTR 1 cut(s) 744
BsaJI CCNNGG 2 cut(s) 106, 311
BsaXI ACNNNNNCTCC 2 cut(s) 568, 598
Bse3DI GCAATG 1 cut(s) 544
BseBI CCWGG 2 cut(s) 312, 396
BseDI CCNNGG 2 cut(s) 106, 311
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 1 cut(s) 287
BseXI GCAGC 4 cut(s) 3, 418, 699, 727
Bsh1236I CGCG 1 cut(s) 557
BshFI GGCC 3 cut(s) 105, 310, 599
BshNI GGYRCC 1 cut(s) 382
BslFI GGGAC 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 138, 564
BsmBI CGTCTC 2 cut(s) 138, 564
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 3 cut(s) 105, 310, 599
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 5 cut(s) 44, 75, 84, 179, 264
BspACI CCGC 7 cut(s) 5, 111, 555, 600, 695, 707, 710
BspANI GGCC 3 cut(s) 105, 310, 599
BspCNI CTCAG 1 cut(s) 288
BspFNI CGCG 1 cut(s) 557
BspLI GGNNCC 1 cut(s) 384
BspMAI CTGCAG 2 cut(s) 75, 717
BspOI GCTAGC 1 cut(s) 501
BspPI GGATC 2 cut(s) 52, 187
BspQI GCTCTTC 1 cut(s) 696
BspT107I GGYRCC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 544
BsrGI TGTACA 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 106, 311
BssMI GATC 5 cut(s) 44, 75, 84, 179, 264
Bst2UI CCWGG 2 cut(s) 312, 396
Bst4CI ACNGT 2 cut(s) 98, 465
Bst6I CTCTTC 1 cut(s) 696
BstAUI TGTACA 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 744
BstC8I GCNNGC 1 cut(s) 499
BstDEI CTNAG 1 cut(s) 296
BstFNI CGCG 1 cut(s) 557
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 5 cut(s) 47, 78, 87, 182, 267
BstMAI GTCTC 2 cut(s) 138, 564
BstMBI GATC 5 cut(s) 44, 75, 84, 179, 264
BstMWI GCNNNNNNNGC 8 cut(s) 111, 382, 428, 554, 688, 703, 712, 715
BstNI CCWGG 2 cut(s) 312, 396
BstSCI CCNGG 2 cut(s) 310, 394
BstSFI CTRYAG 2 cut(s) 71, 713
BstSNI TACGTA 1 cut(s) 744
BstUI CGCG 1 cut(s) 557
BstV1I GCAGC 4 cut(s) 3, 418, 699, 727
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 2 cut(s) 84, 179
BstYI RGATCY 2 cut(s) 84, 179
BsuRI GGCC 3 cut(s) 105, 310, 599
Cac8I GCNNGC 1 cut(s) 499
CfoI GCGC 1 cut(s) 128
CseI GACGC 1 cut(s) 546
Csp6I GTAC 3 cut(s) 220, 582, 741
CviAII CATG 4 cut(s) 419, 603, 698, 732
CviJI RGCY 9 cut(s) 105, 310, 376, 391, 497, 548, 599, 637, 706
CviKI_1 RGCY 9 cut(s) 105, 310, 376, 391, 497, 548, 599, 637, 706
CviQI GTAC 3 cut(s) 220, 582, 741
DdeI CTNAG 1 cut(s) 296
DpnI GATC 5 cut(s) 46, 77, 86, 181, 266
DpnII GATC 5 cut(s) 44, 75, 84, 179, 264
EaeI YGGCCR 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 744
EcoRI GAATTC 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 310, 394
Esp3I CGTCTC 2 cut(s) 138, 564
FaeI CATG 4 cut(s) 422, 606, 701, 735
FaqI GGGAC 1 cut(s) 262
FatI CATG 4 cut(s) 418, 602, 697, 731
FauI CCCGC 1 cut(s) 562
Fnu4HI GCNGC 8 cut(s) 17, 112, 432, 600, 707, 710, 713, 716
Fsp4HI GCNGC 8 cut(s) 17, 112, 432, 600, 707, 710, 713, 716
FspBI CTAG 3 cut(s) 498, 588, 642
GlaI GCGC 1 cut(s) 127
GluI GCNGC 8 cut(s) 17, 112, 432, 600, 707, 710, 713, 716
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 3 cut(s) 105, 310, 599
HgaI GACGC 1 cut(s) 546
HhaI GCGC 1 cut(s) 128
Hin1II CATG 4 cut(s) 422, 606, 701, 735
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 1 cut(s) 613
HpaI GTTAAC 1 cut(s) 277
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 173, 222, 277
Hpy188I TCNGA 3 cut(s) 49, 574, 652
Hpy188III TCNNGA 5 cut(s) 230, 286, 563, 658, 726
Hpy8I GTNNAC 3 cut(s) 173, 222, 277
HpyAV CCTTC 2 cut(s) 210, 648
HpyCH4III ACNGT 2 cut(s) 98, 465
HpyCH4IV ACGT 1 cut(s) 743
HpyCH4V TGCA 4 cut(s) 19, 73, 345, 715
HpyF10VI GCNNNNNNNGC 8 cut(s) 111, 382, 428, 554, 688, 703, 712, 715
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 743
Hsp92II CATG 4 cut(s) 422, 606, 701, 735
HspAI GCGC 1 cut(s) 126
KspAI GTTAAC 1 cut(s) 277
Kzo9I GATC 5 cut(s) 44, 75, 84, 179, 264
LguI GCTCTTC 1 cut(s) 696
LmnI GCTCC 1 cut(s) 629
Lsp1109I GCAGC 4 cut(s) 3, 418, 699, 727
LweI GCATC 2 cut(s) 123, 418
MaeI CTAG 3 cut(s) 498, 588, 642
MaeII ACGT 1 cut(s) 743
MaeIII GTNAC 2 cut(s) 31, 529
MalI GATC 5 cut(s) 46, 77, 86, 181, 266
MboI GATC 5 cut(s) 44, 75, 84, 179, 264
MboII GAAGA 7 cut(s) 79, 109, 259, 490, 680, 683, 713
MflI RGATCY 2 cut(s) 84, 179
MlsI TGGCCA 1 cut(s) 310
MluCI AATT 2 cut(s) 568, 721
MluNI TGGCCA 1 cut(s) 310
MnlI CCTC 2 cut(s) 116, 282
Mox20I TGGCCA 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 675
MscI TGGCCA 1 cut(s) 310
MseI TTAA 3 cut(s) 276, 405, 609
MslI CAYNNNNRTG 2 cut(s) 354, 423
Msp20I TGGCCA 1 cut(s) 310
MspA1I CMGCKG 1 cut(s) 712
MspR9I CCNGG 2 cut(s) 312, 396
MvaI CCWGG 2 cut(s) 312, 396
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 8 cut(s) 111, 382, 428, 554, 688, 703, 712, 715
NdeII GATC 5 cut(s) 44, 75, 84, 179, 264
NheI GCTAGC 1 cut(s) 497
NlaIII CATG 4 cut(s) 422, 606, 701, 735
NlaIV GGNNCC 1 cut(s) 384
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 696
PcsI WCGNNNNNNNCGW 2 cut(s) 53, 260
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 1 cut(s) 613
PkrI GCNGC 8 cut(s) 18, 113, 433, 601, 708, 711, 714, 717
Ppu21I YACGTR 1 cut(s) 744
Psp6I CCWGG 2 cut(s) 310, 394
PspGI CCWGG 2 cut(s) 310, 394
PspN4I GGNNCC 1 cut(s) 384
PstI CTGCAG 2 cut(s) 75, 717
PsuI RGATCY 2 cut(s) 84, 179
RsaI GTAC 3 cut(s) 221, 583, 742
RsaNI GTAC 3 cut(s) 220, 582, 741
RseI CAYNNNNRTG 2 cut(s) 354, 423
SapI GCTCTTC 1 cut(s) 696
SaqAI TTAA 3 cut(s) 276, 405, 609
SatI GCNGC 8 cut(s) 17, 112, 432, 600, 707, 710, 713, 716
Sau3AI GATC 5 cut(s) 44, 75, 84, 179, 264
ScrFI CCNGG 2 cut(s) 312, 396
SfaNI GCATC 2 cut(s) 123, 418
SfcI CTRYAG 2 cut(s) 71, 713
SmiMI CAYNNNNRTG 2 cut(s) 354, 423
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
SnaBI TACGTA 1 cut(s) 744
Sse9I AATT 2 cut(s) 568, 721
SsiI CCGC 7 cut(s) 5, 111, 555, 600, 695, 707, 710
SspMI CTAG 3 cut(s) 498, 588, 642
StyD4I CCNGG 2 cut(s) 310, 394
TaaI ACNGT 2 cut(s) 98, 465
TaiI ACGT 1 cut(s) 746
TaqI TCGA 3 cut(s) 263, 657, 727
TasI AATT 2 cut(s) 568, 721
TatI WGTACW 1 cut(s) 219
TauI GCSGC 4 cut(s) 114, 602, 709, 712
TfiI GAWTC 1 cut(s) 613
Tru1I TTAA 3 cut(s) 276, 405, 609
Tru9I TTAA 3 cut(s) 276, 405, 609
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 4 cut(s) 16, 431, 712, 715
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 165, 714
XapI RAATTY 2 cut(s) 568, 721
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 3 cut(s) 498, 588, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.