pycom07g25340

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013336
Physical Location & Seq
Forward (+)
25688304 .. 25690773
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25340.4

Sequence Viewer

Length: 750 bp
ATGGCGGAGGTGGTGCTGCATATATACGATGTGACGAATAGTGGATCGATCAAGACGAATAGCACCATTCTGCAGATCAACAAGATCTTCAAAGACGGTATCGGCCTCGGCGGCATCTTCCACAGCGCCGTTCAGGTTTATGGTGAGGATGAATGGTCATTTGGGTATTGTGAACAAGGATCTGGTGTGTTTAGTTGCCCTTCTGGAAAAAATCCAATGTACACATATCGTGAAAGCATCGTCCTTGGGACAACAGATTGTTCGATCTTCAAGGTTAACCAAATCTTGAGGGAACTCAGTAGAGAGTGGCCTGGGTATTCGTATGACCTGTTAGCAAAAAACTGCAATCACTTTTGTGATGAGCTTTGTGAAAGGCTTGGGGTGCCAAAGCTTCCAGGTTGGGTTAATCGTTTTGCGCATGCTGGTGATGCTGCTATGGAAGTTGCAGGAAACACTGCAGTACGGTTTAGACAAGCGAAGACAGAGATTGTTACAGCTAGCAAAGTAGCATATCGTTTCCTTGTGGGTGTTACTAATAACGCCACAGCTTCTCCTGAGTCTGCAGGAAATTCAAACAGAGGTGCTCCTAGATTTCAAGCAGCTTGGTTTAAAAACCTAATCACCACAGGAGCAAAGCCATCTAGTAGTTCAGATCTCGAGACCAAGGAAGAAGATGCACTCCGGCAGCACCAGCAACCAGATGCAGAACCGCCGCTGCAGCAGAATTCTAGGACATGGCAAAGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

250

Amino Acids

27.47

Weight (kDa)

6.22

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25660 AT4G25680
fragaria_vesca FvH4_7g30180
malus_domestica MD01G1207800.v1.1 MD07G1278400.v1.1
prunus_persica Prupe.2G300300_v2.0.a1
pyrus_communis pycom01g21860 pycom07g25340
rosa_chinensis RchiOBHm_Chr1g0378231
rosa_laevigata RLG00000026458
rosa_multiflora Rmu_sc0038642.1_g000003
rosa_roxburghii Rroxscaffold_4G00280630
rosa_rugosa Rorug01G0407200
rosa_samantha Rh1AG422500 Rh1BG386600 Rh1CG400200 Rh1DG417800
rosa_wichuraiana Rw1G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 382
AciI CCGC 4 cut(s) 5, 111, 710, 713
AclWI GGATC 2 cut(s) 52, 187
AcsI RAATTY 2 cut(s) 568, 724
AfaI GTAC 2 cut(s) 221, 462
AgsI TTSAA 4 cut(s) 91, 271, 573, 596
AjnI CCWGG 2 cut(s) 310, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 5 cut(s) 364, 391, 497, 548, 602
AluI AGCT 5 cut(s) 364, 391, 497, 548, 602
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 1 cut(s) 653
AlwI GGATC 2 cut(s) 52, 187
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 2 cut(s) 103, 308
ApeKI GCWGC 6 cut(s) 16, 431, 599, 685, 715, 718
ApoI RAATTY 2 cut(s) 568, 724
AspLEI GCGC 2 cut(s) 128, 418
AsuHPI GGTGA 3 cut(s) 155, 437, 613
AsuNHI GCTAGC 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 656
BanI GGYRCC 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 6 cut(s) 3, 418, 611, 697, 702, 730
BccI CCATC 1 cut(s) 646
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 2 cut(s) 312, 396
BcoDI GTCTC 1 cut(s) 653
BfaI CTAG 4 cut(s) 498, 588, 642, 729
BfmI CTRYAG 4 cut(s) 71, 456, 561, 716
BfoI RGCGCY 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 111
BglII AGATCT 2 cut(s) 84, 652
BisI GCNGC 8 cut(s) 17, 112, 432, 600, 686, 713, 716, 719
BlsI GCNGC 8 cut(s) 18, 113, 433, 601, 687, 714, 717, 720
Bme1390I CCNGG 2 cut(s) 312, 396
BmeT110I CYCGRG 1 cut(s) 656
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 2 cut(s) 312, 396
BmsI GCATC 5 cut(s) 123, 246, 418, 664, 691
BmtI GCTAGC 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 307
Bsa29I ATCGAT 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 653
BsaJI CCNNGG 4 cut(s) 106, 244, 311, 663
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
BseBI CCWGG 2 cut(s) 312, 396
BseCI ATCGAT 1 cut(s) 47
BseDI CCNNGG 4 cut(s) 106, 244, 311, 663
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 310, 546
BseXI GCAGC 6 cut(s) 3, 418, 611, 697, 702, 730
BshFI GGCC 2 cut(s) 105, 310
BshNI GGYRCC 1 cut(s) 382
BshVI ATCGAT 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 586
BsiHKCI CYCGRG 1 cut(s) 656
BsiSI CCGG 1 cut(s) 682
BslFI GGGAC 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 2 cut(s) 105, 310
Bso31I GGTCTC 1 cut(s) 653
BsoBI CYCGRG 1 cut(s) 656
Bsp1286I GDGCHC 1 cut(s) 586
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 7 cut(s) 44, 48, 75, 84, 179, 264, 652
BspACI CCGC 4 cut(s) 5, 111, 710, 713
BspANI GGCC 2 cut(s) 105, 310
BspCNI CTCAG 2 cut(s) 309, 547
BspDI ATCGAT 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 384
BspMAI CTGCAG 4 cut(s) 75, 460, 565, 720
BspOI GCTAGC 1 cut(s) 501
BspPI GGATC 2 cut(s) 52, 187
BspT107I GGYRCC 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 653
BsrGI TGTACA 1 cut(s) 219
BssECI CCNNGG 4 cut(s) 106, 244, 311, 663
BssMI GATC 7 cut(s) 44, 48, 75, 84, 179, 264, 652
BssT1I CCWWGG 2 cut(s) 244, 663
Bst2UI CCWGG 2 cut(s) 312, 396
Bst4CI ACNGT 2 cut(s) 98, 465
BstAUI TGTACA 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 420, 499
BstDEI CTNAG 2 cut(s) 296, 555
BstF5I GGATG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 2 cut(s) 128, 418
BstKTI GATC 7 cut(s) 47, 51, 78, 87, 182, 267, 655
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 7 cut(s) 44, 48, 75, 84, 179, 264, 652
BstMWI GCNNNNNNNGC 5 cut(s) 111, 382, 428, 691, 718
BstNI CCWGG 2 cut(s) 312, 396
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 310, 394
BstSFI CTRYAG 4 cut(s) 71, 456, 561, 716
BstV1I GCAGC 6 cut(s) 3, 418, 611, 697, 702, 730
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 3 cut(s) 84, 179, 652
BstYI RGATCY 3 cut(s) 84, 179, 652
Bsu15I ATCGAT 1 cut(s) 47
BsuRI GGCC 2 cut(s) 105, 310
BsuTUI ATCGAT 1 cut(s) 47
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 2 cut(s) 420, 499
CfoI GCGC 2 cut(s) 128, 418
ClaI ATCGAT 1 cut(s) 47
Csp6I GTAC 2 cut(s) 220, 461
CviAII CATG 2 cut(s) 419, 735
CviJI RGCY 9 cut(s) 105, 310, 364, 376, 391, 497, 548, 602, 637
CviKI_1 RGCY 9 cut(s) 105, 310, 364, 376, 391, 497, 548, 602, 637
CviQI GTAC 2 cut(s) 220, 461
DdeI CTNAG 2 cut(s) 296, 555
DpnI GATC 7 cut(s) 46, 50, 77, 86, 181, 266, 654
DpnII GATC 7 cut(s) 44, 48, 75, 84, 179, 264, 652
DraI TTTAAA 1 cut(s) 610
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 244, 663
Eco31I GGTCTC 1 cut(s) 653
Eco88I CYCGRG 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 724
EcoRII CCWGG 2 cut(s) 310, 394
EcoT14I CCWWGG 2 cut(s) 244, 663
ErhI CCWWGG 2 cut(s) 244, 663
FaeI CATG 2 cut(s) 422, 738
FaqI GGGAC 1 cut(s) 262
FatI CATG 2 cut(s) 418, 734
Fnu4HI GCNGC 8 cut(s) 17, 112, 432, 600, 686, 713, 716, 719
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 8 cut(s) 17, 112, 432, 600, 686, 713, 716, 719
FspBI CTAG 4 cut(s) 498, 588, 642, 729
FspI TGCGCA 1 cut(s) 417
GlaI GCGC 2 cut(s) 127, 417
GluI GCNGC 8 cut(s) 17, 112, 432, 600, 686, 713, 716, 719
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 105, 310
HapII CCGG 1 cut(s) 682
HhaI GCGC 2 cut(s) 128, 418
Hin1II CATG 2 cut(s) 422, 738
Hin6I GCGC 2 cut(s) 126, 416
HinP1I GCGC 2 cut(s) 126, 416
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 1 cut(s) 557
HpaI GTTAAC 1 cut(s) 277
HpaII CCGG 1 cut(s) 682
HphI GGTGA 3 cut(s) 155, 437, 613
Hpy166II GTNNAC 3 cut(s) 173, 222, 277
Hpy188I TCNGA 1 cut(s) 652
Hpy188III TCNNGA 7 cut(s) 52, 204, 230, 286, 554, 656, 658
Hpy8I GTNNAC 3 cut(s) 173, 222, 277
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 2 cut(s) 98, 465
HpyCH4V TGCA 9 cut(s) 19, 73, 345, 446, 458, 563, 677, 704, 718
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 382, 428, 691, 718
HpyF3I CTNAG 2 cut(s) 296, 555
Hsp92II CATG 2 cut(s) 422, 738
HspAI GCGC 2 cut(s) 126, 416
KspAI GTTAAC 1 cut(s) 277
Kzo9I GATC 7 cut(s) 44, 48, 75, 84, 179, 264, 652
LmnI GCTCC 2 cut(s) 589, 629
Lsp1109I GCAGC 6 cut(s) 3, 418, 611, 697, 702, 730
LweI GCATC 5 cut(s) 123, 246, 418, 664, 691
MaeI CTAG 4 cut(s) 498, 588, 642, 729
MaeIII GTNAC 3 cut(s) 31, 490, 529
MalI GATC 7 cut(s) 46, 50, 77, 86, 181, 266, 654
MboI GATC 7 cut(s) 44, 48, 75, 84, 179, 264, 652
MboII GAAGA 6 cut(s) 79, 109, 259, 490, 680, 683
MflI RGATCY 3 cut(s) 84, 179, 652
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 2 cut(s) 568, 724
MlyI GAGTC 1 cut(s) 566
MnlI CCTC 4 cut(s) 116, 139, 282, 572
MseI TTAA 3 cut(s) 276, 405, 609
MslI CAYNNNNRTG 2 cut(s) 354, 423
MspA1I CMGCKG 1 cut(s) 715
MspI CCGG 1 cut(s) 682
MspR9I CCNGG 2 cut(s) 312, 396
MvaI CCWGG 2 cut(s) 312, 396
MwoI GCNNNNNNNGC 5 cut(s) 111, 382, 428, 691, 718
NdeII GATC 7 cut(s) 44, 48, 75, 84, 179, 264, 652
NheI GCTAGC 1 cut(s) 497
NlaIII CATG 2 cut(s) 422, 738
NlaIV GGNNCC 1 cut(s) 384
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 31
NsbI TGCGCA 1 cut(s) 417
NspI RCATGY 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 354
PaeI GCATGC 1 cut(s) 422
PaeR7I CTCGAG 1 cut(s) 656
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PkrI GCNGC 8 cut(s) 18, 113, 433, 601, 687, 714, 717, 720
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Psp6I CCWGG 2 cut(s) 310, 394
PspGI CCWGG 2 cut(s) 310, 394
PspN4I GGNNCC 1 cut(s) 384
PstI CTGCAG 4 cut(s) 75, 460, 565, 720
PsuI RGATCY 3 cut(s) 84, 179, 652
RsaI GTAC 2 cut(s) 221, 462
RsaNI GTAC 2 cut(s) 220, 461
RseI CAYNNNNRTG 2 cut(s) 354, 423
SaqAI TTAA 3 cut(s) 276, 405, 609
SatI GCNGC 8 cut(s) 17, 112, 432, 600, 686, 713, 716, 719
Sau3AI GATC 7 cut(s) 44, 48, 75, 84, 179, 264, 652
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 2 cut(s) 312, 396
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 5 cut(s) 123, 246, 418, 664, 691
SfcI CTRYAG 4 cut(s) 71, 456, 561, 716
Sfr274I CTCGAG 1 cut(s) 656
SlaI CTCGAG 1 cut(s) 656
SmiMI CAYNNNNRTG 2 cut(s) 354, 423
SmlI CTYRAG 2 cut(s) 286, 656
SmoI CTYRAG 2 cut(s) 286, 656
SphI GCATGC 1 cut(s) 422
Sse9I AATT 2 cut(s) 568, 724
SsiI CCGC 4 cut(s) 5, 111, 710, 713
SspMI CTAG 4 cut(s) 498, 588, 642, 729
StyD4I CCNGG 2 cut(s) 310, 394
StyI CCWWGG 2 cut(s) 244, 663
TaaI ACNGT 2 cut(s) 98, 465
TaqI TCGA 3 cut(s) 47, 263, 657
TasI AATT 2 cut(s) 568, 724
TatI WGTACW 1 cut(s) 219
TauI GCSGC 2 cut(s) 114, 715
Tru1I TTAA 3 cut(s) 276, 405, 609
Tru9I TTAA 3 cut(s) 276, 405, 609
TscAI CASTG 1 cut(s) 460
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 6 cut(s) 16, 431, 599, 685, 715, 718
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 1 cut(s) 460
XapI RAATTY 2 cut(s) 568, 724
XceI RCATGY 1 cut(s) 422
XhoI CTCGAG 1 cut(s) 656
XspI CTAG 4 cut(s) 498, 588, 642, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.