Rmu_sc0038642.1_g000003

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038642.1
OG0013336
Physical Location & Seq
Reverse (-)
6934 .. 10574
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038642.1_g000003.1.cds

Sequence Viewer

Length: 888 bp
atggcggaggtggtgctgcatatatacgatgtgacgaatagtggatcggacaagacgaacagcaccattatgcagatcaacaagatcttcaaggacggtattggcctcggcggcatcttccacagcgccgttcaggtttatggggaagacgaatggtcatttgggttctgtgaacaaggaagtggtgttttcagttgtccatcaggaaaaaatccaatgtatacatatcgtgaaagcatcgtccttggaacaacagactgttcaatcttcaaggtcaatcaaatcttaagggaactcagtagagagtggcctgggtttacttatgacttgttatcaaaaaattgcaatcacttttgtgatgagctatgcgaaagacttggcgtgccaaagcttccaggctgggttaatcgctttgcacatgcgggtgatgctgcaatggaagtggcaggaaacacagcagtacggtttaaacaagccaagacagagattgtatcggctagcaaagttgcttatcgtttccttgttggcgtcactaacaatgtcatagcttctcccgaagctcctggaaattcaaatagaggggcccctagatttcaatcagcttggttcaaaaacctaatccctaatggagccaaatcgtctagtagttctgaatttgatagtgaagagaaggcacttcggcagcaacagcagacagattcagacttgccgctaccacgacattctcgaccattgcagcagacagattcagacttgccgctaccacgacattctcgaccattgcagcagacagattcagacttgccgctaccacaacattcccgaccattgcagcagacagattcagacttgccactaccacaacattctcgaccattgcatagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

295

Amino Acids

32.72

Weight (kDa)

6.31

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25660 AT4G25680
fragaria_vesca FvH4_7g30180
malus_domestica MD01G1207800.v1.1 MD07G1278400.v1.1
prunus_persica Prupe.2G300300_v2.0.a1
pyrus_communis pycom01g21860 pycom07g25340
rosa_chinensis RchiOBHm_Chr1g0378231
rosa_laevigata RLG00000026458
rosa_multiflora Rmu_sc0038642.1_g000003
rosa_roxburghii Rroxscaffold_4G00280630
rosa_rugosa Rorug01G0407200
rosa_samantha Rh1AG422500 Rh1BG386600 Rh1CG400200 Rh1DG417800
rosa_wichuraiana Rw1G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 221
AciI CCGC 6 cut(s) 5, 111, 422, 710, 758, 806
AclWI GGATC 1 cut(s) 52
AcsI RAATTY 2 cut(s) 568, 653
AcyI GRCGYC 1 cut(s) 528
AfaI GTAC 1 cut(s) 462
AflII CTTAAG 1 cut(s) 286
AgsI TTSAA 6 cut(s) 91, 264, 271, 573, 596, 610
AhdI GACNNNNNGTC 1 cut(s) 154
AjnI CCWGG 3 cut(s) 310, 394, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 5 cut(s) 364, 391, 548, 560, 602
AluI AGCT 5 cut(s) 364, 391, 548, 560, 602
AlwI GGATC 1 cut(s) 52
AoxI GGCC 3 cut(s) 103, 308, 582
ApaI GGGCCC 1 cut(s) 586
ApeKI GCWGC 6 cut(s) 16, 431, 682, 736, 784, 832
ApoI RAATTY 2 cut(s) 568, 653
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 582, 583
AsuHPI GGTGA 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 497
BaeGI GKGCMC 1 cut(s) 586
BanII GRGCYC 1 cut(s) 586
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 6 cut(s) 3, 418, 694, 748, 796, 844
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 3 cut(s) 312, 396, 564
BfaI CTAG 3 cut(s) 498, 588, 642
BfoI RGCGCY 1 cut(s) 129
BfrI CTTAAG 1 cut(s) 286
BglI GCCNNNNNGGC 1 cut(s) 111
BglII AGATCT 1 cut(s) 84
Bme1390I CCNGG 3 cut(s) 312, 396, 564
BmeRI GACNNNNNGTC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 582, 583
BmiI GGNNCC 4 cut(s) 583, 584, 585, 631
BmrFI CCNGG 3 cut(s) 312, 396, 564
BmsI GCATC 3 cut(s) 123, 246, 418
BmtI GCTAGC 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 595
BsaHI GRCGYC 1 cut(s) 528
BsaJI CCNNGG 3 cut(s) 106, 244, 311
Bse3DI GCAATG 5 cut(s) 441, 731, 779, 827, 875
Bse8I GATNNNNATC 1 cut(s) 595
BseBI CCWGG 3 cut(s) 312, 396, 564
BseDI CCNNGG 3 cut(s) 106, 244, 311
BseJI GATNNNNATC 1 cut(s) 595
BseMI GCAATG 5 cut(s) 441, 731, 779, 827, 875
BseMII CTCAG 1 cut(s) 310
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 6 cut(s) 3, 418, 694, 748, 796, 844
BseYI CCCAGC 1 cut(s) 399
BshFI GGCC 3 cut(s) 105, 310, 584
BsnI GGCC 3 cut(s) 105, 310, 584
Bsp120I GGGCCC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 3 cut(s) 44, 75, 84
BspACI CCGC 6 cut(s) 5, 111, 422, 710, 758, 806
BspANI GGCC 3 cut(s) 105, 310, 584
BspCNI CTCAG 1 cut(s) 309
BspLI GGNNCC 4 cut(s) 583, 584, 585, 631
BspOI GCTAGC 1 cut(s) 501
BspPI GGATC 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 286
BsrDI GCAATG 5 cut(s) 441, 731, 779, 827, 875
BssECI CCNNGG 3 cut(s) 106, 244, 311
BssMI GATC 3 cut(s) 44, 75, 84
BssNAI GTATAC 1 cut(s) 222
BssNI GRCGYC 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 222
Bst2UI CCWGG 3 cut(s) 312, 396, 564
Bst4CI ACNGT 3 cut(s) 98, 260, 465
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 528
BstAFI CTTAAG 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 383, 499
BstDEI CTNAG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 3 cut(s) 47, 78, 87
BstMBI GATC 3 cut(s) 44, 75, 84
BstMWI GCNNNNNNNGC 3 cut(s) 111, 428, 688
BstNI CCWGG 3 cut(s) 312, 396, 564
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 3 cut(s) 310, 394, 562
BstSLI GKGCMC 1 cut(s) 586
BstV1I GCAGC 6 cut(s) 3, 418, 694, 748, 796, 844
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BstZ17I GTATAC 1 cut(s) 222
BsuRI GGCC 3 cut(s) 105, 310, 584
Cac8I GCNNGC 2 cut(s) 383, 499
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 582, 583
CseI GACGC 1 cut(s) 517
Csp6I GTAC 1 cut(s) 461
CspCI CAANNNNNGTGG 2 cut(s) 423, 458
CviAII CATG 1 cut(s) 419
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 1 cut(s) 296
DpnI GATC 3 cut(s) 46, 77, 86
DpnII GATC 3 cut(s) 44, 75, 84
DraI TTTAAA 1 cut(s) 469
DriI GACNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 660
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 660
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 586
EcoO109I RGGNCCY 2 cut(s) 582, 583
EcoRII CCWGG 3 cut(s) 310, 394, 562
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 586
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 422
FatI CATG 1 cut(s) 418
FauI CCCGC 1 cut(s) 415
FblI GTMKAC 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 586
FspBI CTAG 3 cut(s) 498, 588, 642
GlaI GCGC 1 cut(s) 127
GsaI CCCAGC 1 cut(s) 403
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 3 cut(s) 105, 310, 584
HgaI GACGC 1 cut(s) 517
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 1 cut(s) 422
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 4 cut(s) 698, 746, 794, 842
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 173, 222, 318
Hpy188I TCNGA 6 cut(s) 49, 652, 703, 751, 799, 847
Hpy188III TCNNGA 7 cut(s) 204, 230, 554, 726, 774, 822, 870
Hpy8I GTNNAC 3 cut(s) 173, 222, 318
HpyAV CCTTC 1 cut(s) 664
HpyCH4III ACNGT 3 cut(s) 98, 260, 465
HpyCH4V TGCA 9 cut(s) 19, 73, 345, 416, 434, 736, 784, 832, 880
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 428, 688
HpyF3I CTNAG 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 1 cut(s) 422
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 3 cut(s) 44, 75, 84
LmnI GCTCC 2 cut(s) 565, 629
Lsp1109I GCAGC 6 cut(s) 3, 418, 694, 748, 796, 844
LweI GCATC 3 cut(s) 123, 246, 418
MaeI CTAG 3 cut(s) 498, 588, 642
MaeIII GTNAC 2 cut(s) 31, 529
MalI GATC 3 cut(s) 46, 77, 86
MboI GATC 3 cut(s) 44, 75, 84
MboII GAAGA 5 cut(s) 79, 109, 158, 259, 677
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 3 cut(s) 340, 568, 653
MnlI CCTC 2 cut(s) 116, 572
MseI TTAA 3 cut(s) 287, 405, 468
MslI CAYNNNNRTG 3 cut(s) 68, 354, 423
MspCI CTTAAG 1 cut(s) 286
MspR9I CCNGG 3 cut(s) 312, 396, 564
MssI GTTTAAAC 1 cut(s) 469
MvaI CCWGG 3 cut(s) 312, 396, 564
MwoI GCNNNNNNNGC 3 cut(s) 111, 428, 688
NdeII GATC 3 cut(s) 44, 75, 84
NheI GCTAGC 1 cut(s) 497
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 4 cut(s) 583, 584, 585, 631
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 31, 529
NspI RCATGY 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 354
PcsI WCGNNNNNNNCGW 3 cut(s) 53, 724, 772
PfeI GAWTC 4 cut(s) 698, 746, 794, 842
PfoI TCCNGGA 1 cut(s) 562
PmeI GTTTAAAC 1 cut(s) 469
Psp6I CCWGG 3 cut(s) 310, 394, 562
PspFI CCCAGC 1 cut(s) 399
PspGI CCWGG 3 cut(s) 310, 394, 562
PspN4I GGNNCC 4 cut(s) 583, 584, 585, 631
PspOMI GGGCCC 1 cut(s) 582
PspPI GGNCC 2 cut(s) 582, 583
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 3 cut(s) 68, 354, 423
SaqAI TTAA 3 cut(s) 287, 405, 468
Sau3AI GATC 3 cut(s) 44, 75, 84
Sau96I GGNCC 2 cut(s) 582, 583
ScrFI CCNGG 3 cut(s) 312, 396, 564
SduI GDGCHC 1 cut(s) 586
SetI ASST 9 cut(s) 12, 138, 276, 366, 393, 550, 562, 604, 618
SfaNI GCATC 3 cut(s) 123, 246, 418
SmiMI CAYNNNNRTG 3 cut(s) 68, 354, 423
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 3 cut(s) 340, 568, 653
SsiI CCGC 6 cut(s) 5, 111, 422, 710, 758, 806
SspMI CTAG 3 cut(s) 498, 588, 642
StyD4I CCNGG 3 cut(s) 310, 394, 562
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 3 cut(s) 98, 260, 465
TaqI TCGA 3 cut(s) 727, 775, 871
TasI AATT 3 cut(s) 340, 568, 653
TauI GCSGC 4 cut(s) 114, 712, 760, 808
TfiI GAWTC 4 cut(s) 698, 746, 794, 842
Tru1I TTAA 3 cut(s) 287, 405, 468
Tru9I TTAA 3 cut(s) 287, 405, 468
TseFI GTSAC 2 cut(s) 31, 529
TseI GCWGC 6 cut(s) 16, 431, 682, 736, 784, 832
Tsp45I GTSAC 2 cut(s) 31, 529
Vha464I CTTAAG 1 cut(s) 286
XapI RAATTY 2 cut(s) 568, 653
XceI RCATGY 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 221
XspI CTAG 3 cut(s) 498, 588, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.