Rh1CG400200

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013336
Physical Location & Seq
Forward (+)
66633349 .. 66637220
3872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG400200.1

Sequence Viewer

Length: 576 bp
ATGTACACATATCGCGAAAGCATCGTCCTTGGAACAACAGATTGTTCAATCTTCAAGGTCAATCAAATCTTGAGGGAACTCAGTAGAGAGTGGCCTGGGTTTACTTATGACTTGTTATCAAAAAATTGCAATCACTTTTGTGATGAGCTATGCGAAAGACTTGGTGTGCCAAAGCTTCCAGGCTGGGTTAATCGCTTTGCACATGCGGGTGATGCTGCAATGGAAGTAGCAGGAAACACAGCAGTACGGTTTAAACAAGCCAAGACAGAGATTGTATCGGCTAGCAAAGTTGCTTATCGTTTCCTTGTTGGCGTCACTAACAATGTCATAGCTTCTCCCGAAGCTCCTGGAAATTCAAATAGAGGGGCCCCTAGATTTCAATCAGCTTGGTTCAAAAACCTAATCCCTAATGGAGCCAAACCGTCTAGTAGTTCTGAATTTGATAGTGAAGAGAAGGCACTTCAGCAGCAACAGCAGGCAGATTCAGACTTGCCGCTACCACGACATTCTCGACCATTGCAGCAGACAGATTCAGACTTGCCGCTACCACAACATTCTCGACCATTGCATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

191

Amino Acids

21.29

Weight (kDa)

7.71

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 2 - 75 7.7e-25 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25660 AT4G25680
fragaria_vesca FvH4_7g30180
malus_domestica MD01G1207800.v1.1 MD07G1278400.v1.1
prunus_persica Prupe.2G300300_v2.0.a1
pyrus_communis pycom01g21860 pycom07g25340
rosa_chinensis RchiOBHm_Chr1g0378231
rosa_laevigata RLG00000026458
rosa_multiflora Rmu_sc0038642.1_g000003
rosa_roxburghii Rroxscaffold_4G00280630
rosa_rugosa Rorug01G0407200
rosa_samantha Rh1AG422500 Rh1BG386600 Rh1CG400200 Rh1DG417800
rosa_wichuraiana Rw1G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 15
AciI CCGC 3 cut(s) 206, 494, 542
AcsI RAATTY 2 cut(s) 352, 437
AcuI CTGAAG 1 cut(s) 446
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 2 cut(s) 5, 246
AgsI TTSAA 5 cut(s) 48, 55, 357, 380, 394
AjnI CCWGG 3 cut(s) 94, 178, 346
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 5 cut(s) 148, 175, 332, 344, 386
AluI AGCT 5 cut(s) 148, 175, 332, 344, 386
AoxI GGCC 2 cut(s) 92, 366
ApaI GGGCCC 1 cut(s) 370
ApeKI GCWGC 3 cut(s) 215, 466, 520
ApoI RAATTY 2 cut(s) 352, 437
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
AspS9I GGNCC 2 cut(s) 366, 367
AsuHPI GGTGA 1 cut(s) 221
AsuNHI GCTAGC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 370
BbvI GCAGC 3 cut(s) 202, 478, 532
BciT130I CCWGG 3 cut(s) 96, 180, 348
BfaI CTAG 3 cut(s) 282, 372, 426
BisI GCNGC 5 cut(s) 216, 467, 494, 521, 542
BlsI GCNGC 5 cut(s) 217, 468, 495, 522, 543
Bme1390I CCNGG 3 cut(s) 96, 180, 348
BmgT120I GGNCC 2 cut(s) 366, 367
BmiI GGNNCC 4 cut(s) 367, 368, 369, 415
BmrFI CCNGG 3 cut(s) 96, 180, 348
BmsI GCATC 2 cut(s) 30, 202
BmtI GCTAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 379
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 28, 95
Bse3DI GCAATG 3 cut(s) 225, 515, 563
Bse8I GATNNNNATC 1 cut(s) 379
BseBI CCWGG 3 cut(s) 96, 180, 348
BseDI CCNNGG 2 cut(s) 28, 95
BseJI GATNNNNATC 1 cut(s) 379
BseMI GCAATG 3 cut(s) 225, 515, 563
BseMII CTCAG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 3 cut(s) 202, 478, 532
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 94, 368
BsnI GGCC 2 cut(s) 94, 368
Bsp120I GGGCCC 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 370
Bsp1407I TGTACA 1 cut(s) 3
Bsp68I TCGCGA 1 cut(s) 15
BspACI CCGC 3 cut(s) 206, 494, 542
BspANI GGCC 2 cut(s) 94, 368
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 4 cut(s) 367, 368, 369, 415
BspOI GCTAGC 1 cut(s) 285
BsrDI GCAATG 3 cut(s) 225, 515, 563
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 2 cut(s) 28, 95
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 3 cut(s) 96, 180, 348
Bst4CI ACNGT 2 cut(s) 249, 423
Bst6I CTCTTC 1 cut(s) 444
BstACI GRCGYC 1 cut(s) 312
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 283, 477
BstDEI CTNAG 1 cut(s) 80
BstFNI CGCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 212, 472
BstNI CCWGG 3 cut(s) 96, 180, 348
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 3 cut(s) 94, 178, 346
BstSLI GKGCMC 1 cut(s) 370
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 202, 478, 532
BsuRI GGCC 2 cut(s) 94, 368
BtuMI TCGCGA 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 283, 477
Cfr13I GGNCC 2 cut(s) 366, 367
CseI GACGC 1 cut(s) 301
Csp6I GTAC 2 cut(s) 4, 245
CviAII CATG 1 cut(s) 203
CviQI GTAC 2 cut(s) 4, 245
DdeI CTNAG 1 cut(s) 80
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 446
EcoO109I RGGNCCY 2 cut(s) 366, 367
EcoRII CCWGG 3 cut(s) 94, 178, 346
EcoT14I CCWWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 206
FaiI YATR 6 cut(s) 10, 108, 151, 204, 329, 570
FatI CATG 1 cut(s) 202
FauI CCCGC 1 cut(s) 199
Fnu4HI GCNGC 5 cut(s) 216, 467, 494, 521, 542
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 5 cut(s) 216, 467, 494, 521, 542
FspBI CTAG 3 cut(s) 282, 372, 426
GluI GCNGC 5 cut(s) 216, 467, 494, 521, 542
GsaI CCCAGC 1 cut(s) 187
HaeIII GGCC 2 cut(s) 94, 368
HgaI GACGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 482, 530
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 6, 102
Hpy188I TCNGA 3 cut(s) 436, 487, 535
Hpy188III TCNNGA 5 cut(s) 14, 70, 338, 510, 558
Hpy8I GTNNAC 2 cut(s) 6, 102
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 2 cut(s) 249, 423
HpyCH4V TGCA 5 cut(s) 129, 200, 218, 520, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 472
HpyF3I CTNAG 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 1 cut(s) 206
LmnI GCTCC 2 cut(s) 349, 413
LpnPI CCDG 9 cut(s) 81, 108, 165, 169, 192, 216, 333, 360, 461
Lsp1109I GCAGC 3 cut(s) 202, 478, 532
LweI GCATC 2 cut(s) 30, 202
MaeI CTAG 3 cut(s) 282, 372, 426
MaeIII GTNAC 1 cut(s) 313
MboII GAAGA 2 cut(s) 43, 461
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 3 cut(s) 124, 352, 437
MnlI CCTC 2 cut(s) 66, 356
MseI TTAA 2 cut(s) 189, 252
MslI CAYNNNNRTG 2 cut(s) 138, 207
MspR9I CCNGG 3 cut(s) 96, 180, 348
MssI GTTTAAAC 1 cut(s) 253
MvaI CCWGG 3 cut(s) 96, 180, 348
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 212, 472
NheI GCTAGC 1 cut(s) 281
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 4 cut(s) 367, 368, 369, 415
NmuCI GTSAC 1 cut(s) 313
NruI TCGCGA 1 cut(s) 15
NspI RCATGY 1 cut(s) 206
OliI CACNNNNGTG 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 508
PfeI GAWTC 2 cut(s) 482, 530
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 5 cut(s) 217, 468, 495, 522, 543
PmeI GTTTAAAC 1 cut(s) 253
Psp6I CCWGG 3 cut(s) 94, 178, 346
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 3 cut(s) 94, 178, 346
PspN4I GGNNCC 4 cut(s) 367, 368, 369, 415
PspOMI GGGCCC 1 cut(s) 366
PspPI GGNCC 2 cut(s) 366, 367
RruI TCGCGA 1 cut(s) 15
RsaI GTAC 2 cut(s) 5, 246
RsaNI GTAC 2 cut(s) 4, 245
RseI CAYNNNNRTG 2 cut(s) 138, 207
SaqAI TTAA 2 cut(s) 189, 252
SatI GCNGC 5 cut(s) 216, 467, 494, 521, 542
Sau96I GGNCC 2 cut(s) 366, 367
ScrFI CCNGG 3 cut(s) 96, 180, 348
SduI GDGCHC 1 cut(s) 370
SetI ASST 7 cut(s) 60, 150, 177, 334, 346, 388, 402
SfaNI GCATC 2 cut(s) 30, 202
SmiMI CAYNNNNRTG 2 cut(s) 138, 207
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 3 cut(s) 124, 352, 437
SsiI CCGC 3 cut(s) 206, 494, 542
SspMI CTAG 3 cut(s) 282, 372, 426
StyD4I CCNGG 3 cut(s) 94, 178, 346
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 249, 423
TaqI TCGA 2 cut(s) 511, 559
TasI AATT 3 cut(s) 124, 352, 437
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 496, 544
TfiI GAWTC 2 cut(s) 482, 530
Tru1I TTAA 2 cut(s) 189, 252
Tru9I TTAA 2 cut(s) 189, 252
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 3 cut(s) 215, 466, 520
Tsp45I GTSAC 1 cut(s) 313
XapI RAATTY 2 cut(s) 352, 437
XceI RCATGY 1 cut(s) 206
XspI CTAG 3 cut(s) 282, 372, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.