Rh1BG386600

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013336
Physical Location & Seq
Forward (+)
51389708 .. 51393158
3451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG386600.1

Sequence Viewer

Length: 792 bp
ATGGCGGAGGTGGTGCTGCATATATACGATGTGACGAATAGTGGATCGGACAAGACGAACAGCACCATTATGCAGATCAACAAGATCTTCAAGGACGGTATTGGCCTCGGCGGCATCTTCCACAGCGCCGTTCAGGTTTATGGGGAAGATGAATGGTCATTTGGGTTCTGTGAACAAGGAAGTGGTGTTTTCAGTTGTCCATCAGGAAAAAATCCAATGTACACATATCGCGAAAGCATCGTCCTTGGAACAACAGATTGTTCAATCTTCAAGGTCAATCAAATCTTGAGGGAACTCAGTAGAGAGTGGCCTGGGTTTACTTATGACTTGTTATCAAAAAATTGCAATCACTTTTGTGATGAGCTATGCGAAAGACTTGGTGTGCCAAAGCTTCCAGGCTGGGTTAATCGCTTTGCACATGCGGGTGATGCTGCAATGGAAGTAGCAGGAAACACAGCAGTACGGTTTAAACAAGCCAAGACAGAGATTGTATCGGCTAGCAAAGTTGCTTATCGTTTCCTTGTTGGCGTCACTAACAATGTCATAGCTTCTCCCGAAGCTCCTGGAAATTCAAATAGAGGGGCCCCTAGATTTCAATCAGCTTGGTTCAAAAACCTAATCCCTAATGGAGCCAAACCGTCTAGTAGTTCTGAATTTGATAGTGAAGAGAAGGCACTTCAGCAGCAACAGCAGGCAGATTCAGACTTGCCGCTACCACGACATTCTCGACCATTGCAGCAGACAGATTCAGACTTGCCGCTACCACAACATTCTCGACCATTGCATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

263

Amino Acids

29.02

Weight (kDa)

6.17

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 3 - 147 2.6e-43 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25660 AT4G25680
fragaria_vesca FvH4_7g30180
malus_domestica MD01G1207800.v1.1 MD07G1278400.v1.1
prunus_persica Prupe.2G300300_v2.0.a1
pyrus_communis pycom01g21860 pycom07g25340
rosa_chinensis RchiOBHm_Chr1g0378231
rosa_laevigata RLG00000026458
rosa_multiflora Rmu_sc0038642.1_g000003
rosa_roxburghii Rroxscaffold_4G00280630
rosa_rugosa Rorug01G0407200
rosa_samantha Rh1AG422500 Rh1BG386600 Rh1CG400200 Rh1DG417800
rosa_wichuraiana Rw1G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 231
AciI CCGC 5 cut(s) 5, 111, 422, 710, 758
AclWI GGATC 1 cut(s) 52
AcsI RAATTY 2 cut(s) 568, 653
AcuI CTGAAG 1 cut(s) 662
AcyI GRCGYC 1 cut(s) 528
AfaI GTAC 2 cut(s) 221, 462
AgsI TTSAA 6 cut(s) 91, 264, 271, 573, 596, 610
AjnI CCWGG 3 cut(s) 310, 394, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 5 cut(s) 364, 391, 548, 560, 602
AluI AGCT 5 cut(s) 364, 391, 548, 560, 602
AlwI GGATC 1 cut(s) 52
AoxI GGCC 3 cut(s) 103, 308, 582
ApaI GGGCCC 1 cut(s) 586
ApeKI GCWGC 4 cut(s) 16, 431, 682, 736
ApoI RAATTY 2 cut(s) 568, 653
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 582, 583
AsuHPI GGTGA 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 497
BaeGI GKGCMC 1 cut(s) 586
BanII GRGCYC 1 cut(s) 586
BbvI GCAGC 4 cut(s) 3, 418, 694, 748
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 3 cut(s) 312, 396, 564
BfaI CTAG 3 cut(s) 498, 588, 642
BfoI RGCGCY 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 111
BglII AGATCT 1 cut(s) 84
BisI GCNGC 7 cut(s) 17, 112, 432, 683, 710, 737, 758
BlsI GCNGC 7 cut(s) 18, 113, 433, 684, 711, 738, 759
Bme1390I CCNGG 3 cut(s) 312, 396, 564
BmgT120I GGNCC 2 cut(s) 582, 583
BmiI GGNNCC 4 cut(s) 583, 584, 585, 631
BmrFI CCNGG 3 cut(s) 312, 396, 564
BmsI GCATC 3 cut(s) 123, 246, 418
BmtI GCTAGC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 595
BsaHI GRCGYC 1 cut(s) 528
BsaJI CCNNGG 3 cut(s) 106, 244, 311
Bse3DI GCAATG 3 cut(s) 441, 731, 779
Bse8I GATNNNNATC 1 cut(s) 595
BseBI CCWGG 3 cut(s) 312, 396, 564
BseDI CCNNGG 3 cut(s) 106, 244, 311
BseJI GATNNNNATC 1 cut(s) 595
BseMI GCAATG 3 cut(s) 441, 731, 779
BseMII CTCAG 1 cut(s) 310
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 4 cut(s) 3, 418, 694, 748
BseYI CCCAGC 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 3 cut(s) 105, 310, 584
BsnI GGCC 3 cut(s) 105, 310, 584
Bsp120I GGGCCC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 586
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 3 cut(s) 44, 75, 84
Bsp68I TCGCGA 1 cut(s) 231
BspACI CCGC 5 cut(s) 5, 111, 422, 710, 758
BspANI GGCC 3 cut(s) 105, 310, 584
BspCNI CTCAG 1 cut(s) 309
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 4 cut(s) 583, 584, 585, 631
BspOI GCTAGC 1 cut(s) 501
BspPI GGATC 1 cut(s) 52
BsrDI GCAATG 3 cut(s) 441, 731, 779
BsrGI TGTACA 1 cut(s) 219
BssECI CCNNGG 3 cut(s) 106, 244, 311
BssMI GATC 3 cut(s) 44, 75, 84
BssNI GRCGYC 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 3 cut(s) 312, 396, 564
Bst4CI ACNGT 3 cut(s) 98, 465, 639
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 499, 693
BstDEI CTNAG 1 cut(s) 296
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 3 cut(s) 47, 78, 87
BstMBI GATC 3 cut(s) 44, 75, 84
BstMWI GCNNNNNNNGC 3 cut(s) 111, 428, 688
BstNI CCWGG 3 cut(s) 312, 396, 564
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 3 cut(s) 310, 394, 562
BstSLI GKGCMC 1 cut(s) 586
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 4 cut(s) 3, 418, 694, 748
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 3 cut(s) 105, 310, 584
BtuMI TCGCGA 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 499, 693
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 582, 583
CseI GACGC 1 cut(s) 517
Csp6I GTAC 2 cut(s) 220, 461
CviAII CATG 1 cut(s) 419
CviQI GTAC 2 cut(s) 220, 461
DdeI CTNAG 1 cut(s) 296
DpnI GATC 3 cut(s) 46, 77, 86
DpnII GATC 3 cut(s) 44, 75, 84
DraI TTTAAA 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 586
Eco57I CTGAAG 1 cut(s) 662
EcoO109I RGGNCCY 2 cut(s) 582, 583
EcoRII CCWGG 3 cut(s) 310, 394, 562
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 586
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 422
FatI CATG 1 cut(s) 418
FauI CCCGC 1 cut(s) 415
Fnu4HI GCNGC 7 cut(s) 17, 112, 432, 683, 710, 737, 758
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 7 cut(s) 17, 112, 432, 683, 710, 737, 758
FspBI CTAG 3 cut(s) 498, 588, 642
GlaI GCGC 1 cut(s) 127
GluI GCNGC 7 cut(s) 17, 112, 432, 683, 710, 737, 758
GsaI CCCAGC 1 cut(s) 403
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 3 cut(s) 105, 310, 584
HgaI GACGC 1 cut(s) 517
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 1 cut(s) 422
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 2 cut(s) 698, 746
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 173, 222, 318
Hpy188I TCNGA 4 cut(s) 49, 652, 703, 751
Hpy188III TCNNGA 6 cut(s) 204, 230, 286, 554, 726, 774
Hpy8I GTNNAC 3 cut(s) 173, 222, 318
HpyAV CCTTC 1 cut(s) 664
HpyCH4III ACNGT 3 cut(s) 98, 465, 639
HpyCH4V TGCA 7 cut(s) 19, 73, 345, 416, 434, 736, 784
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 428, 688
HpyF3I CTNAG 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 1 cut(s) 422
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 3 cut(s) 44, 75, 84
LmnI GCTCC 2 cut(s) 565, 629
Lsp1109I GCAGC 4 cut(s) 3, 418, 694, 748
LweI GCATC 3 cut(s) 123, 246, 418
MaeI CTAG 3 cut(s) 498, 588, 642
MaeIII GTNAC 2 cut(s) 31, 529
MalI GATC 3 cut(s) 46, 77, 86
MboI GATC 3 cut(s) 44, 75, 84
MboII GAAGA 5 cut(s) 79, 109, 158, 259, 677
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 3 cut(s) 340, 568, 653
MnlI CCTC 3 cut(s) 116, 282, 572
MseI TTAA 2 cut(s) 405, 468
MslI CAYNNNNRTG 3 cut(s) 68, 354, 423
MspR9I CCNGG 3 cut(s) 312, 396, 564
MssI GTTTAAAC 1 cut(s) 469
MvaI CCWGG 3 cut(s) 312, 396, 564
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 111, 428, 688
NdeII GATC 3 cut(s) 44, 75, 84
NheI GCTAGC 1 cut(s) 497
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 4 cut(s) 583, 584, 585, 631
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 31, 529
NruI TCGCGA 1 cut(s) 231
NspI RCATGY 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 354
PcsI WCGNNNNNNNCGW 2 cut(s) 53, 724
PfeI GAWTC 2 cut(s) 698, 746
PfoI TCCNGGA 1 cut(s) 562
PkrI GCNGC 7 cut(s) 18, 113, 433, 684, 711, 738, 759
PmeI GTTTAAAC 1 cut(s) 469
Psp6I CCWGG 3 cut(s) 310, 394, 562
PspFI CCCAGC 1 cut(s) 399
PspGI CCWGG 3 cut(s) 310, 394, 562
PspN4I GGNNCC 4 cut(s) 583, 584, 585, 631
PspOMI GGGCCC 1 cut(s) 582
PspPI GGNCC 2 cut(s) 582, 583
PsuI RGATCY 1 cut(s) 84
RruI TCGCGA 1 cut(s) 231
RsaI GTAC 2 cut(s) 221, 462
RsaNI GTAC 2 cut(s) 220, 461
RseI CAYNNNNRTG 3 cut(s) 68, 354, 423
SaqAI TTAA 2 cut(s) 405, 468
SatI GCNGC 7 cut(s) 17, 112, 432, 683, 710, 737, 758
Sau3AI GATC 3 cut(s) 44, 75, 84
Sau96I GGNCC 2 cut(s) 582, 583
ScrFI CCNGG 3 cut(s) 312, 396, 564
SduI GDGCHC 1 cut(s) 586
SetI ASST 9 cut(s) 12, 138, 276, 366, 393, 550, 562, 604, 618
SfaNI GCATC 3 cut(s) 123, 246, 418
SmiMI CAYNNNNRTG 3 cut(s) 68, 354, 423
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 3 cut(s) 340, 568, 653
SsiI CCGC 5 cut(s) 5, 111, 422, 710, 758
SspMI CTAG 3 cut(s) 498, 588, 642
StyD4I CCNGG 3 cut(s) 310, 394, 562
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 3 cut(s) 98, 465, 639
TaqI TCGA 2 cut(s) 727, 775
TasI AATT 3 cut(s) 340, 568, 653
TatI WGTACW 1 cut(s) 219
TauI GCSGC 3 cut(s) 114, 712, 760
TfiI GAWTC 2 cut(s) 698, 746
Tru1I TTAA 2 cut(s) 405, 468
Tru9I TTAA 2 cut(s) 405, 468
TseFI GTSAC 2 cut(s) 31, 529
TseI GCWGC 4 cut(s) 16, 431, 682, 736
Tsp45I GTSAC 2 cut(s) 31, 529
TspDTI ATGAA 1 cut(s) 165
XapI RAATTY 2 cut(s) 568, 653
XceI RCATGY 1 cut(s) 422
XspI CTAG 3 cut(s) 498, 588, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.