FvH4_7g30180

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013336
Physical Location & Seq
Forward (+)
22058660 .. 22062388
3729 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30180.t1

Sequence Viewer

Length: 744 bp
ATGGCGGAGGTGGTGCTGCATATATACGATGTGACGAATAGTGGATCGGAGAAGACGAACAGCACCATTATGCAGATCAACAAGATCTTTAAGGACGGTATTGGCCTCGGCGGCATCTTCCACAGCGCCGTTCAGGTTTATGGAGAAGATGAATGGTCATTTGGGTTTTGTGAACAAGGAAGTGGTGTTTTCAGTTGTCCTTCAGGAAAAAATCCAATGTACACGTATCGCGAATCCATCGTCCTTGGGACAACAGATTGTTCAATCTTTAAGGTCAATCAAATCTTGAGGGAGCTTAGTAGAGAGTGGCCTGGGTATACTTATGACTTGTTATCAAAAAATTGCAACCACTTCTGTGATGAGCTATGCGAAAGACTTGGGGTGCCAAAGCTTCCAGGCTGGGTTAATCGCTTTGCACATGCCGGTGATGCTGCAATGGAAGTAGCAGGAAACACAGCAGTTCGATTGAAACAAGCAAAGACAGAGATTGTATCGGCGAGCAAAGTTGCTTATCGTTTCCTTGTTGGCGTCACTAACAACATAGGTTCTCCTGAAGCCTCTGGAAATTCAAATAGAGGAGCCCCTAGATTGCAAGGAGCTTGGTTCAAAAACCTAATCACTACAGGAGCCAAACCGTCTAGTAGTTCTGAATATGATAGTGAAGAGAATGCTCTTAGGCCGCAACAGCAGACAGCTTCTGATTTGCCGCTGCCACAACCTTCTCAACCATTGCACAATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

248

Amino Acids

26.97

Weight (kDa)

5.97

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 3 - 147 5e-43 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25660 AT4G25680
fragaria_vesca FvH4_7g30180
malus_domestica MD01G1207800.v1.1 MD07G1278400.v1.1
prunus_persica Prupe.2G300300_v2.0.a1
pyrus_communis pycom01g21860 pycom07g25340
rosa_chinensis RchiOBHm_Chr1g0378231
rosa_laevigata RLG00000026458
rosa_multiflora Rmu_sc0038642.1_g000003
rosa_roxburghii Rroxscaffold_4G00280630
rosa_rugosa Rorug01G0407200
rosa_samantha Rh1AG422500 Rh1BG386600 Rh1CG400200 Rh1DG417800
rosa_wichuraiana Rw1G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 382
AccI GTMKAC 1 cut(s) 317
AccII CGCG 1 cut(s) 231
AciI CCGC 4 cut(s) 5, 111, 680, 707
AclWI GGATC 1 cut(s) 52
AcsI RAATTY 1 cut(s) 565
AcuI CTGAAG 2 cut(s) 186, 573
AcyI GRCGYC 1 cut(s) 528
AfaI GTAC 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 4 cut(s) 264, 469, 570, 607
AjnI CCWGG 2 cut(s) 310, 394
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 5 cut(s) 295, 364, 391, 599, 695
AluI AGCT 5 cut(s) 295, 364, 391, 599, 695
AlwI GGATC 1 cut(s) 52
AlwNI CAGNNNCTG 1 cut(s) 698
AoxI GGCC 3 cut(s) 103, 308, 677
ApeKI GCWGC 3 cut(s) 16, 431, 709
ApoI RAATTY 1 cut(s) 565
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 437
BanI GGYRCC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 59
BbvI GCAGC 3 cut(s) 3, 418, 696
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 2 cut(s) 312, 396
BfaI CTAG 2 cut(s) 585, 639
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 111
BglII AGATCT 1 cut(s) 84
BisI GCNGC 6 cut(s) 17, 112, 432, 680, 707, 710
BlsI GCNGC 6 cut(s) 18, 113, 433, 681, 708, 711
Bme1390I CCNGG 2 cut(s) 312, 396
BmiI GGNNCC 3 cut(s) 384, 580, 628
BmrFI CCNGG 2 cut(s) 312, 396
BmsI GCATC 2 cut(s) 123, 418
BpiI GAAGAC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 307
BsaAI YACGTR 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 528
BsaJI CCNNGG 3 cut(s) 106, 244, 311
Bse118I RCCGGY 1 cut(s) 422
Bse3DI GCAATG 2 cut(s) 441, 728
BseBI CCWGG 2 cut(s) 312, 396
BseDI CCNNGG 3 cut(s) 106, 244, 311
BseMI GCAATG 2 cut(s) 441, 728
BseRI GAGGAG 1 cut(s) 591
BseXI GCAGC 3 cut(s) 3, 418, 696
BseYI CCCAGC 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 3 cut(s) 105, 310, 679
BshNI GGYRCC 1 cut(s) 382
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 3 cut(s) 105, 310, 679
Bsp1286I GDGCHC 1 cut(s) 583
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 3 cut(s) 44, 75, 84
Bsp68I TCGCGA 1 cut(s) 231
BspACI CCGC 4 cut(s) 5, 111, 680, 707
BspANI GGCC 3 cut(s) 105, 310, 679
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 384, 580, 628
BspPI GGATC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 382
BsrDI GCAATG 2 cut(s) 441, 728
BsrFI RCCGGY 1 cut(s) 422
BsrGI TGTACA 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 3 cut(s) 106, 244, 311
BssMI GATC 3 cut(s) 44, 75, 84
BssNAI GTATAC 1 cut(s) 318
BssNI GRCGYC 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 312, 396
Bst4CI ACNGT 2 cut(s) 98, 636
Bst6I CTCTTC 1 cut(s) 657
BstACI GRCGYC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 499
BstDEI CTNAG 2 cut(s) 296, 674
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 3 cut(s) 47, 78, 87
BstMBI GATC 3 cut(s) 44, 75, 84
BstMWI GCNNNNNNNGC 3 cut(s) 111, 428, 685
BstNI CCWGG 2 cut(s) 312, 396
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 310, 394
BstSFI CTRYAG 1 cut(s) 621
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 3 cut(s) 3, 418, 696
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BstZ17I GTATAC 1 cut(s) 318
BsuRI GGCC 3 cut(s) 105, 310, 679
BtuMI TCGCGA 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 499
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 422
CseI GACGC 1 cut(s) 517
Csp6I GTAC 1 cut(s) 220
CviAII CATG 1 cut(s) 419
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 2 cut(s) 296, 674
DpnI GATC 3 cut(s) 46, 77, 86
DpnII GATC 3 cut(s) 44, 75, 84
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 583
Eco57I CTGAAG 2 cut(s) 186, 573
EcoRII CCWGG 2 cut(s) 310, 394
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 1 cut(s) 422
FaqI GGGAC 1 cut(s) 262
FatI CATG 1 cut(s) 418
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 6 cut(s) 17, 112, 432, 680, 707, 710
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 6 cut(s) 17, 112, 432, 680, 707, 710
FspBI CTAG 2 cut(s) 585, 639
GlaI GCGC 1 cut(s) 127
GluI GCNGC 6 cut(s) 17, 112, 432, 680, 707, 710
GsaI CCCAGC 1 cut(s) 403
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 3 cut(s) 105, 310, 679
HapII CCGG 1 cut(s) 423
HgaI GACGC 1 cut(s) 517
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 1 cut(s) 422
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 423
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 173, 222, 318
Hpy188I TCNGA 3 cut(s) 49, 649, 700
Hpy188III TCNNGA 5 cut(s) 204, 230, 286, 551, 561
Hpy8I GTNNAC 3 cut(s) 173, 222, 318
HpyAV CCTTC 2 cut(s) 210, 729
HpyCH4III ACNGT 2 cut(s) 98, 636
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 7 cut(s) 19, 73, 345, 416, 434, 592, 733
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 428, 685
HpyF3I CTNAG 2 cut(s) 296, 674
HpySE526I ACGT 1 cut(s) 224
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 1 cut(s) 422
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 3 cut(s) 44, 75, 84
LmnI GCTCC 4 cut(s) 292, 578, 596, 626
Lsp1109I GCAGC 3 cut(s) 3, 418, 696
LweI GCATC 2 cut(s) 123, 418
MaeI CTAG 2 cut(s) 585, 639
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 2 cut(s) 31, 529
MalI GATC 3 cut(s) 46, 77, 86
MboI GATC 3 cut(s) 44, 75, 84
MboII GAAGA 4 cut(s) 64, 109, 158, 674
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 583
MluCI AATT 2 cut(s) 340, 565
MnlI CCTC 4 cut(s) 116, 282, 568, 569
MseI TTAA 3 cut(s) 90, 270, 405
MslI CAYNNNNRTG 3 cut(s) 68, 354, 423
MspA1I CMGCKG 1 cut(s) 709
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 2 cut(s) 312, 396
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 2 cut(s) 312, 396
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 111, 428, 685
NdeII GATC 3 cut(s) 44, 75, 84
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 3 cut(s) 384, 580, 628
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 31, 529
NruI TCGCGA 1 cut(s) 231
NspI RCATGY 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 6 cut(s) 18, 113, 433, 681, 708, 711
Ppu21I YACGTR 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 310, 394
PspFI CCCAGC 1 cut(s) 399
PspGI CCWGG 2 cut(s) 310, 394
PspN4I GGNNCC 3 cut(s) 384, 580, 628
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 84
RruI TCGCGA 1 cut(s) 231
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 3 cut(s) 68, 354, 423
SaqAI TTAA 3 cut(s) 90, 270, 405
SatI GCNGC 6 cut(s) 17, 112, 432, 680, 707, 710
Sau3AI GATC 3 cut(s) 44, 75, 84
ScrFI CCNGG 2 cut(s) 312, 396
SduI GDGCHC 1 cut(s) 583
SfaNI GCATC 2 cut(s) 123, 418
SfcI CTRYAG 1 cut(s) 621
SmiMI CAYNNNNRTG 3 cut(s) 68, 354, 423
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 2 cut(s) 340, 565
SsiI CCGC 4 cut(s) 5, 111, 680, 707
SspMI CTAG 2 cut(s) 585, 639
StyD4I CCNGG 2 cut(s) 310, 394
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 98, 636
TaiI ACGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 463
TasI AATT 2 cut(s) 340, 565
TatI WGTACW 1 cut(s) 219
TauI GCSGC 3 cut(s) 114, 682, 709
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 3 cut(s) 90, 270, 405
Tru9I TTAA 3 cut(s) 90, 270, 405
TseFI GTSAC 2 cut(s) 31, 529
TseI GCWGC 3 cut(s) 16, 431, 709
Tsp45I GTSAC 2 cut(s) 31, 529
TspDTI ATGAA 1 cut(s) 165
XapI RAATTY 1 cut(s) 565
XceI RCATGY 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 2 cut(s) 585, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.